Miyakogusa Predicted Gene

Lj6g3v1954240.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1954240.1 Non Characterized Hit- tr|B9SZL2|B9SZL2_RICCO
Pentatricopeptide repeat-containing protein, putative
,62.07,3e-18,seg,NULL,NODE_78396_length_616_cov_11.641233.path2.1
         (168 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g018550.1 | pentatricopeptide (PPR) repeat protein | HC | ...   138   3e-33

>Medtr2g018550.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr2:5845943-5843116 | 20130731
          Length = 790

 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/185 (50%), Positives = 109/185 (58%), Gaps = 19/185 (10%)

Query: 1   MALLRLNQHPLRKVLATH-----LSSFALTLHSATTSIPVSYSTANLLGD-EGDCNIKNF 54
           MA+LRLN + LRK LA+      LS  AL L  +  S+  S STA+     +G  N +NF
Sbjct: 1   MAILRLNHYLLRKALASRFCGNPLSCIALNL--SHYSVLGSDSTASFEAQCKGKFNTENF 58

Query: 55  NHGFGKLGSRFPGELGFAASVNDDVQ---------EDDEIESIELKSS--DXXXXXXXXX 103
           N GFGK+G  F  E  F ASV+DD+            D  ES E  SS            
Sbjct: 59  NDGFGKMGHGFSDESRFVASVDDDLDEEDEVEENGSSDIDESFEFISSFDGNGSNKQREN 118

Query: 104 XXXXXXDESEFRHPLVREVCRLITLKSAWNPKFEGNLRHLLRSLKPPLVCAVLRSQADER 163
                 DESEFRHP+VREVCRLI+L+S WNPKFE NLRHLLRSL P LVCAVLRSQ DER
Sbjct: 119 IARFEIDESEFRHPIVREVCRLISLRSNWNPKFEENLRHLLRSLNPRLVCAVLRSQDDER 178

Query: 164 VALSF 168
           +AL F
Sbjct: 179 IALDF 183