Miyakogusa Predicted Gene

Lj6g3v1949720.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1949720.1 Non Characterized Hit- tr|G7IP39|G7IP39_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,74.91,0,seg,NULL,CUFF.60283.1
         (511 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g018740.1 | plastid transcriptionally active protein | HC ...   623   e-178

>Medtr2g018740.1 | plastid transcriptionally active protein | HC |
           chr2:5947209-5940063 | 20130731
          Length = 540

 Score =  623 bits (1606), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 333/531 (62%), Positives = 366/531 (68%), Gaps = 27/531 (5%)

Query: 1   MASIQANLVPNLSFNHFQTPSSSYLVGVGNLQCRVGFSKSRRRLPSHXXXXXXXXXXDEY 60
           M+ IQANL+PNLSFNHFQT  S+YLVGVGNL CRVGF KSR++LPS+           + 
Sbjct: 1   MSLIQANLLPNLSFNHFQT--STYLVGVGNLPCRVGFRKSRKKLPSYSCIRCEKNDEIKK 58

Query: 61  TE------LEHVSVERPPYYSYMDSTSGQLEPASGARSSLPEEDLWPEGTVNQVRAGRAX 114
            E      +++V+VERPPYYSYMDSTSGQLEPASGAR+S+PE + WPEGTV QVRA RA 
Sbjct: 59  DEENKDEVIDYVTVERPPYYSYMDSTSGQLEPASGARASIPEVEYWPEGTVEQVRAARAP 118

Query: 115 XXXXXXXXXXXXXXKPGSRRKKGRTXXXXXXXXXXXXXXXXXXTDTALLEVXXXXXXXXX 174
                          PGSRRK  RT                   D  L EV         
Sbjct: 119 TPMGESLGSPSYGSNPGSRRKSYRTSVSGSSSEGNVEGNVELD-DPGLPEVLVEPQEDSE 177

Query: 175 XXXXXXXXXXXXXXXPVEEEASEFDLDKRLGVPHPFVDPKIKKPIEGTLTSEELWWNWRK 234
                            EEE +E+ LDK+ G PHPF+DPKIKKPIEGTLTSEELWWNWRK
Sbjct: 178 EFTSDYVVYQSE----PEEEETEYKLDKKFGAPHPFIDPKIKKPIEGTLTSEELWWNWRK 233

Query: 235 PEKEQWSRWQRRRPDVETVFLKAMAETGQVKLYGEEPTLTECALYRARRHLYKXXXXXXX 294
           PEKEQWSRWQRRRPD ETVFLKAMAETGQVKLYGEEPTLTE ALYRARRHLYK       
Sbjct: 234 PEKEQWSRWQRRRPDTETVFLKAMAETGQVKLYGEEPTLTETALYRARRHLYKEERLEAE 293

Query: 295 XXXXXXIGPMAYYSEWVKVWKGDTSREAIQKHFEDTGEDENTQLIEMFSHQTAEEYRIMM 354
                 IGP+AYYSEWVK WK DTS EAIQKHFE+TGEDE TQLIEMFS+QT  EYR+MM
Sbjct: 294 QEKLERIGPIAYYSEWVKAWKRDTSHEAIQKHFEETGEDETTQLIEMFSNQTDREYRVMM 353

Query: 355 GTDLRIPRDPLAMRMREDQIKQIWGGDPVYPTVNYIQDPDVVIDFRGPDFHEPTPDMLAY 414
           GTD+RI RDPLAMRMREDQIKQIWGGDPVYPTVNYIQDPD VID+RG DFHEPTP+ML +
Sbjct: 354 GTDVRIRRDPLAMRMREDQIKQIWGGDPVYPTVNYIQDPDEVIDYRGADFHEPTPNMLPF 413

Query: 415 LKEHGKIISREELDKILAKEKNEQVELTDMDEAMAKAVDI--------------XXXXXX 460
           LKEHGKIISREEL+KIL K+K EQVE+TD+DEAMAKAVDI                    
Sbjct: 414 LKEHGKIISREELEKILEKQKTEQVEMTDIDEAMAKAVDIGENDDEEDSDVDVEEVVGEG 473

Query: 461 XXXXXXXXXXXXXXXXXKIDRKWSVLKTTPQPRKSKAKPKKDGPMSLEEAV 511
                            KIDR WSVLKTTPQ RKSK KPKK+GPM+L+EAV
Sbjct: 474 EEEEEVEAEGDEEEDESKIDRNWSVLKTTPQLRKSKPKPKKEGPMTLDEAV 524