Miyakogusa Predicted Gene

Lj6g3v1946570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1946570.1 Non Characterized Hit- tr|K3YJT9|K3YJT9_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si014508,48.11,2e-18,OS02G0684300 PROTEIN,NULL;
UNCHARACTERIZED,NULL; Ndc1_Nup,Nucleoporin protein
Ndc1-Nup,CUFF.60273.1
         (349 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g018830.1 | nucleoporin protein Ndc1-Nup | HC | chr2:59948...   597   e-171
Medtr8g008810.1 | nucleoporin protein Ndc1-Nup | HC | chr8:18873...   476   e-134
Medtr8g007580.1 | nucleoporin protein Ndc1-Nup | HC | chr8:16717...   453   e-128
Medtr8g008813.1 | hypothetical protein | LC | chr8:1891306-18929...   192   4e-49
Medtr0199s0020.1 | hypothetical protein | LC | scaffold0199:7143...   132   6e-31
Medtr0199s0030.1 | hypothetical protein | LC | scaffold0199:8622...    62   7e-10
Medtr8g007575.1 | hypothetical protein | LC | chr8:1664070-16638...    60   5e-09

>Medtr2g018830.1 | nucleoporin protein Ndc1-Nup | HC |
           chr2:5994809-5999813 | 20130731
          Length = 494

 Score =  597 bits (1540), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 296/351 (84%), Positives = 315/351 (89%), Gaps = 6/351 (1%)

Query: 1   MGIPAAAKGSLKLSTVAFFFSAVLLDILPHSFKCSVATRAFFVEQIVFSFASFAVFLCWE 60
           MGIP AAK + KLSTVAF FSA+LL+I+PH FKCS+AT+ F  EQIVF  ASFA+F  WE
Sbjct: 148 MGIPLAAKRAFKLSTVAFIFSAILLEIIPHPFKCSIATKKFVAEQIVFFVASFAIFFSWE 207

Query: 61  VTHHLHRVLHTKRSIFAPPKGSAAAETNPSEHLLSALEESNPTSLLRYLAYLDLCMVCEN 120
           +TH+LH VLHTKRSIFAPPKGSAAAETNPSEHLLSALEESNPTSLLRY AYLDLCMV EN
Sbjct: 208 LTHNLHTVLHTKRSIFAPPKGSAAAETNPSEHLLSALEESNPTSLLRYHAYLDLCMVSEN 267

Query: 121 NVDTWRRAAFFEETGETYKRVIAVCLRPLEHLASRLGEGLGNSPDKPAQLSNQLLSPTDA 180
           NVDTWRRAAFFEETGETYKRVIAVCLRPLE LASRLGE LGNS DKP  LSNQL SPT  
Sbjct: 268 NVDTWRRAAFFEETGETYKRVIAVCLRPLEQLASRLGEDLGNSTDKPTNLSNQLASPT-- 325

Query: 181 RLDLKNGEELYNFQLHACCSRIVASLTACSRKEDKFGVAQLSGSNAAVVSTLISCLLAVE 240
             D+K+ EELYNFQL+A CSRIVASLTACSRKEDKFG AQLSGSNAAVVSTLISCLLAVE
Sbjct: 326 --DVKHVEELYNFQLYAWCSRIVASLTACSRKEDKFGAAQLSGSNAAVVSTLISCLLAVE 383

Query: 241 NFMGKKTNLQSPNQLLGPAGIKWATANSGRVDVPA--VKRRTGPVNPKAYAIADVLRTSI 298
           NFMGKKTNLQSPNQLLG AGIKWATANSGR+D+ A  VKR+ GPVN KAYAIADVL+TSI
Sbjct: 384 NFMGKKTNLQSPNQLLGSAGIKWATANSGRLDIAAASVKRKNGPVNSKAYAIADVLKTSI 443

Query: 299 YQIVSAFHDEMLAGSKASLLEKDWITSGKPLFGTHEMLIQKLRLFLDFRAT 349
           YQIVSAFHDEML+G+K+SLLEKDWITS KPLFGT EMLIQKLRLFLDFRAT
Sbjct: 444 YQIVSAFHDEMLSGTKSSLLEKDWITSEKPLFGTREMLIQKLRLFLDFRAT 494


>Medtr8g008810.1 | nucleoporin protein Ndc1-Nup | HC |
           chr8:1887345-1889774 | 20130731
          Length = 303

 Score =  476 bits (1226), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 245/323 (75%), Positives = 261/323 (80%), Gaps = 21/323 (6%)

Query: 27  ILPHSFKCSVATRAFFVEQIVFSFASFAVFLCWEVTHHLHRVLHTKRSIFAPPKGSAAAE 86
           ++P+ +   +AT  F  EQIVF   +FA+F CWE+TH LHRVLHTKR IFAPPKGSAAAE
Sbjct: 2   LIPYLYTHHIATWEFVAEQIVFLVPTFAIFFCWELTHTLHRVLHTKRFIFAPPKGSAAAE 61

Query: 87  TNPSEHLLSALEESNPTSLLRYLAYLDLCMVCENNVDTWRRAAFFEETGETYKRVIAVCL 146
            NPSE LLS LEESNPTSLLRY AYLDLCMV ENNVD WRRAAFFEETGETYKRVIAVCL
Sbjct: 62  KNPSELLLSVLEESNPTSLLRYHAYLDLCMVSENNVDAWRRAAFFEETGETYKRVIAVCL 121

Query: 147 RPLEHLASRLGEGLGNSPDKPAQLSNQLLSPTDARLDLKNGEELYNFQLHACCSRIVASL 206
           RPLE LASRLGE LGNS DKP  LSNQL SPT    D+K+ EEL NFQ +A CSRIVASL
Sbjct: 122 RPLEQLASRLGEDLGNSADKPTNLSNQLSSPT----DVKHIEELDNFQPYAWCSRIVASL 177

Query: 207 TACSRKEDKFGVAQLSGSNAAVVSTLISCLLAVENFMGKKTNLQSPNQLLGPAGIKWATA 266
           TA SRKEDKFGVAQLSG+NAAVVSTLISCLLAVENFMGKKTNLQSPNQL           
Sbjct: 178 TARSRKEDKFGVAQLSGNNAAVVSTLISCLLAVENFMGKKTNLQSPNQLGS--------- 228

Query: 267 NSGRVDVPAVKRRTGPVNPKAYAIADVLRTSIYQIVSAFHDEMLAGSKASLLEKDWITSG 326
                   AVKR  GPVN KAYAIADVL+TSIYQIVSAFHDEML+ +K+SLLEKDWI S 
Sbjct: 229 --------AVKRENGPVNSKAYAIADVLKTSIYQIVSAFHDEMLSDTKSSLLEKDWIPSK 280

Query: 327 KPLFGTHEMLIQKLRLFLDFRAT 349
           KPLFGT EMLIQKLRLFL FRAT
Sbjct: 281 KPLFGTREMLIQKLRLFLVFRAT 303


>Medtr8g007580.1 | nucleoporin protein Ndc1-Nup | HC |
           chr8:1671706-1666244 | 20130731
          Length = 471

 Score =  453 bits (1166), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/350 (69%), Positives = 263/350 (75%), Gaps = 24/350 (6%)

Query: 3   IPAAAKGSLKLSTVAFFFSAVLLDILPHS---FKCSVATRAFFVEQIVFSFASFAVFLCW 59
           IP AAK + KLS V FF SA+L  ++P      KC  ATR F  EQIV   A+FA+F CW
Sbjct: 143 IPFAAKYAYKLSIVGFFSSAILSVMIPDPDPFIKCITATREFVAEQIVLFVATFAIFFCW 202

Query: 60  EVTHHLHRVLHTKRSIFAPPKGSAAAETNPSEHLLSALEESNPTSLLRYLAYLDLCMVCE 119
           E+TH LHRVLHTKR +FAPPKGSAAAE NPSE LLS L+ SNPTSLLRY AYLDLCMV E
Sbjct: 203 ELTHTLHRVLHTKRFVFAPPKGSAAAEKNPSELLLSVLQRSNPTSLLRYHAYLDLCMVSE 262

Query: 120 NNVDTWRRAAFFEETGETYKRVIAVCLRPLEHLASRLGEGLGNSPDKPAQLSNQLLSPTD 179
           NNVD WRRAA FE+TG+TYK VIAVCLRPLE LASRL + LGNS  KP  LSNQL SPT 
Sbjct: 263 NNVDAWRRAAIFEKTGQTYKLVIAVCLRPLEQLASRLRKDLGNSAGKPTNLSNQLSSPT- 321

Query: 180 ARLDLKNGEELYNFQLHACCSRIVASLTACSRKEDKFGVAQLSGSNAAVVSTLISCLLAV 239
              D+K+ EEL NFQ +A CSRIVASLTA S KEDKFG A+LSGSN AVVSTLISCLLAV
Sbjct: 322 ---DVKHIEELDNFQSYAWCSRIVASLTARSCKEDKFGFARLSGSNTAVVSTLISCLLAV 378

Query: 240 ENFMGKKTNLQSPNQLLGPAGIKWATANSGRVDVPAVKRRTGPVNPKAYAIADVLRTSIY 299
           ENFMGKKTNLQSPNQL                   AVKR  GPVN KAYAIADVL+TSIY
Sbjct: 379 ENFMGKKTNLQSPNQLGS-----------------AVKRENGPVNSKAYAIADVLKTSIY 421

Query: 300 QIVSAFHDEMLAGSKASLLEKDWITSGKPLFGTHEMLIQKLRLFLDFRAT 349
           QIVS FHDEML+  K+  LEKDWI+S  PLFGT  MLIQKL LFL F+AT
Sbjct: 422 QIVSVFHDEMLSDFKSCFLEKDWISSNIPLFGTRLMLIQKLHLFLAFQAT 471


>Medtr8g008813.1 | hypothetical protein | LC | chr8:1891306-1892964
           | 20130731
          Length = 215

 Score =  192 bits (488), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 114/152 (75%), Gaps = 23/152 (15%)

Query: 198 CCSRIVASLTACSRKEDKFGVAQLSGSNAAVVSTLISCLLAVENFMGKKTNLQSPNQLLG 257
           CC      LT C   + KFGVAQLSGSNAAVVSTLISCLLAVENFMGKKTNLQSPNQL  
Sbjct: 87  CC------LTDCLFTQRKFGVAQLSGSNAAVVSTLISCLLAVENFMGKKTNLQSPNQL-- 138

Query: 258 PAGIKWATANSGRVDVPAVKRRTGPVNPKAYAIADVLRTSIYQIVSAFHDEMLAGSKASL 317
                            AVKR+   VN +AYAIADVL+TSIYQIVSAFHD+ML+G+K+S 
Sbjct: 139 ---------------AFAVKRKNEHVNSEAYAIADVLKTSIYQIVSAFHDQMLSGTKSSP 183

Query: 318 LEKDWITSGKPLFGTHEMLIQKLRLFLDFRAT 349
           LEKDWITS KPL+GT EMLIQKLRLFL F+AT
Sbjct: 184 LEKDWITSSKPLYGTREMLIQKLRLFLVFQAT 215


>Medtr0199s0020.1 | hypothetical protein | LC |
           scaffold0199:7143-6281 | 20130731
          Length = 181

 Score =  132 bits (331), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 89/133 (66%), Gaps = 5/133 (3%)

Query: 173 QLLSPT--DARLDLKNGEELYNFQLHACCSRIVASLTACSRKEDKFGVAQLSGSNAAVVS 230
           Q++ PT  +  L +   E       +A CSRIVASL  CS + DKFGVAQLSGSNAAVVS
Sbjct: 34  QIIKPTVTENHLSIAFDERPCRLVPYAWCSRIVASLIVCSHEVDKFGVAQLSGSNAAVVS 93

Query: 231 TLISCLLAVENFMGKKTNLQSPNQLLGPAGIKWATANSGRVDVPA--VKRRTGPVNPKAY 288
           TLISCLLAVEN MGKKTNLQ PNQ LG AGIKWA AN  R+D  A  VKR+   VN KAY
Sbjct: 94  TLISCLLAVENIMGKKTNLQLPNQ-LGSAGIKWAIANGRRLDTAAVFVKRKNRAVNSKAY 152

Query: 289 AIADVLRTSIYQI 301
              + ++    +I
Sbjct: 153 EFYNFVKRQKLKI 165


>Medtr0199s0030.1 | hypothetical protein | LC |
           scaffold0199:8622-8065 | 20130731
          Length = 141

 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 32/42 (76%)

Query: 138 YKRVIAVCLRPLEHLASRLGEGLGNSPDKPAQLSNQLLSPTD 179
           YK VIAVCLRPLE LASRLGE LGNS  K   LS QL SPT+
Sbjct: 98  YKSVIAVCLRPLEQLASRLGEDLGNSAGKATNLSKQLSSPTE 139


>Medtr8g007575.1 | hypothetical protein | LC | chr8:1664070-1663840
           | 20130731
          Length = 76

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 39/61 (63%), Gaps = 3/61 (4%)

Query: 243 MGKKTNLQSPNQLLGPAGIKWATANSGRVDVPA--VKRRTGPVNPKAYAIADVLRTSIYQ 300
           MGKKTNLQ PNQL G AGIKWA AN  R+D  A  VKR+   VN KAY   + ++    +
Sbjct: 1   MGKKTNLQLPNQL-GSAGIKWAIANGRRLDTAAVFVKRKNRAVNSKAYEFYNFVKRQKLK 59

Query: 301 I 301
           I
Sbjct: 60  I 60