Miyakogusa Predicted Gene
- Lj6g3v1946530.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1946530.1 Non Characterized Hit- tr|B9SKQ1|B9SKQ1_RICCO
Brca1 associated ring domain, putative OS=Ricinus
comm,43.21,0.0000000000002,ZF_RING_1,Zinc finger, RING-type, conserved
site; RING/U-box,NULL; zf-C3HC4_2,NULL; ZF_RING_2,Zinc f,CUFF.60262.1
(96 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g018880.1 | breast cancer susceptibility-like protein, put... 172 5e-44
Medtr7g098170.1 | breast cancer susceptibility protein, putative... 70 5e-13
Medtr2g090595.2 | RING zinc finger protein | HC | chr2:38732994-... 52 2e-07
Medtr2g090595.1 | RING zinc finger protein | HC | chr2:38732918-... 52 2e-07
Medtr2g084630.1 | DNA/RNA helicase | HC | chr2:35865804-35875314... 51 2e-07
Medtr5g085250.1 | E3 ubiquitin-protein ligase COP1 | HC | chr5:3... 50 6e-07
Medtr7g089190.1 | DNA/RNA helicase | HC | chr7:34885684-34881166... 49 1e-06
Medtr4g088520.1 | E3 ubiquitin-protein ligase RING1a-like protei... 48 2e-06
Medtr2g084630.2 | DNA/RNA helicase | HC | chr2:35865773-35875405... 48 2e-06
Medtr3g037230.1 | zinc finger, C3HC4 type (RING finger) protein ... 47 3e-06
Medtr3g037230.2 | zinc finger, C3HC4 type (RING finger) protein ... 47 4e-06
Medtr3g037230.3 | zinc finger, C3HC4 type (RING finger) protein ... 47 4e-06
>Medtr2g018880.1 | breast cancer susceptibility-like protein,
putative | HC | chr2:6018865-6024557 | 20130731
Length = 1006
Score = 172 bits (437), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 78/88 (88%), Positives = 83/88 (94%)
Query: 1 MGDLERMGRELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASACPVCKIPFTRREVR 60
MGDLE+MGRELKCPICL LL SA+SLTCNHLFCNSCI KSMKSAS+CPVCKIPFTRREVR
Sbjct: 1 MGDLEKMGRELKCPICLGLLHSAVSLTCNHLFCNSCIFKSMKSASSCPVCKIPFTRREVR 60
Query: 61 PAPHMDNLVTIYKNMEAASGITMFVTQN 88
PAPH+DNLVTIYKNMEAASGI +F TQN
Sbjct: 61 PAPHIDNLVTIYKNMEAASGINLFGTQN 88
>Medtr7g098170.1 | breast cancer susceptibility protein, putative
| HC | chr7:39230788-39237133 | 20130731
Length = 687
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 50/74 (67%)
Query: 4 LERMGRELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASACPVCKIPFTRREVRPAP 63
+++ ELKCP+CL+L + L CNHLFC+SC+ S S C +C +++++R P
Sbjct: 23 FQKLALELKCPLCLNLFKKPVLLPCNHLFCSSCLADSTSIRSECALCNTKCSQKDIRHLP 82
Query: 64 HMDNLVTIYKNMEA 77
++++VTIYK+++A
Sbjct: 83 FVESIVTIYKSLDA 96
>Medtr2g090595.2 | RING zinc finger protein | HC |
chr2:38732994-38739213 | 20130731
Length = 433
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 3 DLERMGRELKCPICLSLLDSAIS-LTCNHLFCNSCILKSMK-SASACPVCKIP-FTRREV 59
+L + ++++CPICL ++ + + C H FC CI KSM+ + CP C+ +RR +
Sbjct: 115 ELSDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSL 174
Query: 60 RPAPHMDNLV-TIYKNM 75
R P+ D L+ T+Y N+
Sbjct: 175 RDDPNYDALIATLYPNI 191
>Medtr2g090595.1 | RING zinc finger protein | HC |
chr2:38732918-38738851 | 20130731
Length = 504
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 3 DLERMGRELKCPICLSLLDSAIS-LTCNHLFCNSCILKSMK-SASACPVCKIP-FTRREV 59
+L + ++++CPICL ++ + + C H FC CI KSM+ + CP C+ +RR +
Sbjct: 115 ELSDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSL 174
Query: 60 RPAPHMDNLV-TIYKNM 75
R P+ D L+ T+Y N+
Sbjct: 175 RDDPNYDALIATLYPNI 191
>Medtr2g084630.1 | DNA/RNA helicase | HC | chr2:35865804-35875314 |
20130731
Length = 1022
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 6 RMGRELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASA--CPVCKIPFTRREVRPAP 63
R G + +CPICL + ++ C H C C+L S +++++ CPVC+ +++++ AP
Sbjct: 780 RKGEQGECPICLEAFEDSVLTPCAHRLCRECLLASWRNSTSGLCPVCRKTVSKQDLITAP 839
Query: 64 HMDNL-VTIYKNMEAASGITMFVTQNNLPPIKSS 96
+ I KN + +T + N L ++SS
Sbjct: 840 TESRFQIDIEKNWVESCKVTGLM--NELENLRSS 871
>Medtr5g085250.1 | E3 ubiquitin-protein ligase COP1 | HC |
chr5:36796022-36807260 | 20130731
Length = 677
Score = 49.7 bits (117), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 1 MGDLERMGRELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASACPVCKIPFTRREVR 60
+ + + ++ CPIC+ ++ A +C H FC CI+ +++ S CP C T +
Sbjct: 40 IATMTELDKDFLCPICMQIIKDAFLTSCGHSFCYMCIITHLRNKSDCPCCGHYLTNSNLF 99
Query: 61 PAPHMDNLV 69
P +D L+
Sbjct: 100 PNFLLDKLL 108
>Medtr7g089190.1 | DNA/RNA helicase | HC | chr7:34885684-34881166 |
20130731
Length = 822
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 8 GRELKCPICLSLLDSAISLTCNHLFCNSCILKSM-KSASACPVCKIPFTRREVRPAP 63
G + CPICLS + C H+FC CILK++ +S S+CP+C+ + E+ AP
Sbjct: 568 GEDFDCPICLSPPTDIVITCCAHIFCRECILKTLQRSNSSCPLCRRSLSETELFSAP 624
>Medtr4g088520.1 | E3 ubiquitin-protein ligase RING1a-like protein,
putative | HC | chr4:35141489-35136880 | 20130731
Length = 440
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 9 RELKCPICLSLLDSAIS-LTCNHLFCNSCILKSMK-SASACPVCKIP-FTRREVRPAPHM 65
+E++CPICL ++ + + C H FC CI KSM+ + CP C+ +RR +R P+
Sbjct: 68 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNY 127
Query: 66 DNLV-TIYKNME 76
D L+ IY +++
Sbjct: 128 DALIAAIYPDID 139
>Medtr2g084630.2 | DNA/RNA helicase | HC | chr2:35865773-35875405 |
20130731
Length = 1025
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 6 RMGRELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASA--CPVCKIPFTRREVRPAP 63
R G + +CPICL + ++ C H C C+L S +++++ CPVC+ +++++ AP
Sbjct: 774 RKGEQGECPICLEAFEDSVLTPCAHRLCRECLLASWRNSTSGLCPVCRKTVSKQDLITAP 833
Query: 64 HMDNL-VTIYKNMEAASGITMFVTQNNLPPIKSS 96
+ I KN + +T + N L ++SS
Sbjct: 834 TESRFQIDIEKNWVESCKVTGLM--NELENLRSS 865
>Medtr3g037230.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr3:13637290-13627006 | 20130731
Length = 480
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 10 ELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASACPVCK 51
+ C +CL LL ++ C H FC SC+ +SM + CP+C+
Sbjct: 187 DFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCR 228
>Medtr3g037230.2 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr3:13636031-13627006 | 20130731
Length = 433
Score = 47.0 bits (110), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 10 ELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASACPVCK 51
+ C +CL LL ++ C H FC SC+ +SM + CP+C+
Sbjct: 140 DFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCR 181
>Medtr3g037230.3 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr3:13635998-13627006 | 20130731
Length = 433
Score = 47.0 bits (110), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 10 ELKCPICLSLLDSAISLTCNHLFCNSCILKSMKSASACPVCK 51
+ C +CL LL ++ C H FC SC+ +SM + CP+C+
Sbjct: 140 DFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCR 181