Miyakogusa Predicted Gene

Lj6g3v1946410.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1946410.1 Non Characterized Hit- tr|H9V7M0|H9V7M0_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda GN=C,63.01,5e-18,no
description,NULL; F-box domain,F-box domain, cyclin-like;
F-box-like,NULL; seg,NULL; FAMILY NOT N,CUFF.60253.1
         (384 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g019080.2 | F-box plant-like protein | HC | chr2:6146172-6...   609   e-174
Medtr2g019080.1 | F-box plant-like protein | HC | chr2:6146178-6...   609   e-174
Medtr4g029330.1 | F-box plant-like protein, putative | HC | chr4...   179   4e-45

>Medtr2g019080.2 | F-box plant-like protein | HC |
           chr2:6146172-6143348 | 20130731
          Length = 389

 Score =  609 bits (1570), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 322/395 (81%), Positives = 334/395 (84%), Gaps = 17/395 (4%)

Query: 1   MCSLRADQ----IYPDPDAXXXXXXXXXDHFDRLPDSLLLLVFNKIADVKALGRCCVVSR 56
           MCS+RADQ    IYP+P           DHFDR+PDSLLLLVFNKI DVKALGRCCVVSR
Sbjct: 1   MCSIRADQQPNRIYPEPS-----YFPQIDHFDRIPDSLLLLVFNKIGDVKALGRCCVVSR 55

Query: 57  RFHTLVPQVENVVVRVDCVIXXXXXXXXXXXXXKSRGPFWNLLRLVFGGIAKPIQTLGQF 116
           RFH+LVPQVENVVVRVDCVI             KSRGPFWNLLRLVFGGIAKPIQTLGQF
Sbjct: 56  RFHSLVPQVENVVVRVDCVISDDDSNSSVNSSDKSRGPFWNLLRLVFGGIAKPIQTLGQF 115

Query: 117 LGPKRAXXXXXXX-----PLAVGSEDDGDGGVTHHSPTQVLKNFNEIRLLRIELPSGELG 171
           LGPKR             PLAVGSE+DGDGGVTHHSPTQVLKNFNEIRLLRIELPSGELG
Sbjct: 116 LGPKRGSNSSVNSGSGSSPLAVGSEEDGDGGVTHHSPTQVLKNFNEIRLLRIELPSGELG 175

Query: 172 IEHGVLLKWRADYGSTLDNCVILGASSVSHPKSQDG--NRVDAAAASCGSDDNGSIPDSF 229
           IE GVLLKWRAD+GSTLDNCVILGASSV  PKSQDG        A + G DDNGSIPDSF
Sbjct: 176 IEDGVLLKWRADFGSTLDNCVILGASSVFQPKSQDGVVAVDGGGANNNGGDDNGSIPDSF 235

Query: 230 YTNGGLKLRVVWTISSLIAASARHYLLQPIISEHRTLDHLVLTDADGQGVLYMNRDQLEE 289
           YTNGGLKLRVVWTISSLIAASARHYLLQPIISEH+TLD+LVLTDADGQGVLYMNRDQLEE
Sbjct: 236 YTNGGLKLRVVWTISSLIAASARHYLLQPIISEHKTLDNLVLTDADGQGVLYMNRDQLEE 295

Query: 290 LRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGVVLKGATLVAIRPSEQSPATSAKKE 349
           LRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGVVLKGATLVAIRPSE SP T+ KKE
Sbjct: 296 LRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGVVLKGATLVAIRPSELSP-TAGKKE 354

Query: 350 ASDLSWVSTAFEEPYRTAATMLVKRRTYCLEMNSF 384
            SDLSWVSTAFEEPYR+AA ML+KRRTYCLEMNSF
Sbjct: 355 GSDLSWVSTAFEEPYRSAAAMLIKRRTYCLEMNSF 389


>Medtr2g019080.1 | F-box plant-like protein | HC |
           chr2:6146178-6143348 | 20130731
          Length = 389

 Score =  609 bits (1570), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 322/395 (81%), Positives = 334/395 (84%), Gaps = 17/395 (4%)

Query: 1   MCSLRADQ----IYPDPDAXXXXXXXXXDHFDRLPDSLLLLVFNKIADVKALGRCCVVSR 56
           MCS+RADQ    IYP+P           DHFDR+PDSLLLLVFNKI DVKALGRCCVVSR
Sbjct: 1   MCSIRADQQPNRIYPEPS-----YFPQIDHFDRIPDSLLLLVFNKIGDVKALGRCCVVSR 55

Query: 57  RFHTLVPQVENVVVRVDCVIXXXXXXXXXXXXXKSRGPFWNLLRLVFGGIAKPIQTLGQF 116
           RFH+LVPQVENVVVRVDCVI             KSRGPFWNLLRLVFGGIAKPIQTLGQF
Sbjct: 56  RFHSLVPQVENVVVRVDCVISDDDSNSSVNSSDKSRGPFWNLLRLVFGGIAKPIQTLGQF 115

Query: 117 LGPKRAXXXXXXX-----PLAVGSEDDGDGGVTHHSPTQVLKNFNEIRLLRIELPSGELG 171
           LGPKR             PLAVGSE+DGDGGVTHHSPTQVLKNFNEIRLLRIELPSGELG
Sbjct: 116 LGPKRGSNSSVNSGSGSSPLAVGSEEDGDGGVTHHSPTQVLKNFNEIRLLRIELPSGELG 175

Query: 172 IEHGVLLKWRADYGSTLDNCVILGASSVSHPKSQDG--NRVDAAAASCGSDDNGSIPDSF 229
           IE GVLLKWRAD+GSTLDNCVILGASSV  PKSQDG        A + G DDNGSIPDSF
Sbjct: 176 IEDGVLLKWRADFGSTLDNCVILGASSVFQPKSQDGVVAVDGGGANNNGGDDNGSIPDSF 235

Query: 230 YTNGGLKLRVVWTISSLIAASARHYLLQPIISEHRTLDHLVLTDADGQGVLYMNRDQLEE 289
           YTNGGLKLRVVWTISSLIAASARHYLLQPIISEH+TLD+LVLTDADGQGVLYMNRDQLEE
Sbjct: 236 YTNGGLKLRVVWTISSLIAASARHYLLQPIISEHKTLDNLVLTDADGQGVLYMNRDQLEE 295

Query: 290 LRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGVVLKGATLVAIRPSEQSPATSAKKE 349
           LRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGVVLKGATLVAIRPSE SP T+ KKE
Sbjct: 296 LRVKPLSASSASKRTLVPALNMRLWYAPHLELPDGVVLKGATLVAIRPSELSP-TAGKKE 354

Query: 350 ASDLSWVSTAFEEPYRTAATMLVKRRTYCLEMNSF 384
            SDLSWVSTAFEEPYR+AA ML+KRRTYCLEMNSF
Sbjct: 355 GSDLSWVSTAFEEPYRSAAAMLIKRRTYCLEMNSF 389


>Medtr4g029330.1 | F-box plant-like protein, putative | HC |
           chr4:10129576-10129037 | 20130731
          Length = 153

 Score =  179 bits (454), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 95/145 (65%), Positives = 99/145 (68%), Gaps = 21/145 (14%)

Query: 39  FNKIADVKALGRCCVVSRRFHTLVPQVENVVVRVDCVIXXXXXXXXXXXXXKSRGPFWNL 98
            NKI D KALGRCCVVSR FH+LVPQV NVVVRVDCVI             KSRGPFWNL
Sbjct: 17  LNKIGDFKALGRCCVVSRHFHSLVPQVANVVVRVDCVISDDDSNSSENSSDKSRGPFWNL 76

Query: 99  LRLVFGGIAKPIQTLGQFLGPKRAXXXXXXXPLAVGSEDDGDGGVTHHSPTQVLKNFNEI 158
           LRLVFGGIAKPIQ LG                     E+DGDGGVTHHSPTQVLKNFN+I
Sbjct: 77  LRLVFGGIAKPIQNLG---------------------EEDGDGGVTHHSPTQVLKNFNKI 115

Query: 159 RLLRIELPSGELGIEHGVLLKWRAD 183
            LL +ELPSGELGIE GV  KWR D
Sbjct: 116 CLLWVELPSGELGIEDGVFSKWRVD 140