Miyakogusa Predicted Gene
- Lj6g3v1946390.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1946390.2 Non Characterized Hit- tr|B8LPZ5|B8LPZ5_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,30.79,3e-18,KH_1,K Homology domain, type 1; no description,NULL;
seg,NULL; Eukaryotic type KH-domain (KH-domain ,CUFF.60252.2
(608 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g019090.1 | RNA-binding KH domain protein | HC | chr2:6163... 719 0.0
Medtr2g019090.2 | RNA-binding KH domain protein | HC | chr2:6163... 657 0.0
Medtr6g012630.4 | RNA-binding KH domain protein | HC | chr6:3864... 162 1e-39
Medtr6g012630.1 | RNA-binding KH domain protein | HC | chr6:3864... 161 1e-39
Medtr6g012630.5 | RNA-binding KH domain protein | HC | chr6:3864... 161 1e-39
Medtr6g012630.2 | RNA-binding KH domain protein | HC | chr6:3864... 161 1e-39
Medtr6g012630.3 | RNA-binding KH domain protein | HC | chr6:3864... 139 1e-32
Medtr7g011080.2 | RNA-binding KH domain protein | HC | chr7:2893... 136 6e-32
Medtr7g011080.1 | RNA-binding KH domain protein | HC | chr7:2893... 136 6e-32
Medtr3g110650.2 | RNA-binding KH domain protein | HC | chr3:5171... 133 4e-31
Medtr3g110650.1 | RNA-binding KH domain protein | HC | chr3:5171... 133 4e-31
Medtr4g008080.1 | RNA-binding KH domain protein | HC | chr4:1379... 123 7e-28
Medtr4g093650.1 | RNA-binding KH domain protein | HC | chr4:3709... 122 1e-27
Medtr3g091800.1 | RNA-binding KH domain protein | HC | chr3:4179... 121 3e-27
Medtr5g031720.1 | RNA-binding KH domain protein | HC | chr5:1360... 94 3e-19
Medtr2g009650.1 | RNA-binding KH domain protein | HC | chr2:2001... 91 3e-18
Medtr1g070380.3 | poly(rC)-binding-like protein | HC | chr1:3114... 62 2e-09
Medtr1g070380.2 | poly(rC)-binding-like protein | HC | chr1:3114... 62 2e-09
Medtr1g070380.1 | poly(rC)-binding-like protein | HC | chr1:3114... 60 4e-09
Medtr7g080630.5 | poly(rC)-binding-like protein | HC | chr7:3070... 57 4e-08
Medtr7g080630.4 | poly(rC)-binding-like protein | HC | chr7:3070... 57 4e-08
Medtr7g080630.1 | poly(rC)-binding-like protein | HC | chr7:3070... 57 4e-08
Medtr7g080630.2 | poly(rC)-binding-like protein | HC | chr7:3070... 57 4e-08
Medtr7g080630.3 | poly(rC)-binding-like protein | HC | chr7:3070... 57 4e-08
Medtr7g115340.2 | poly(rC)-binding-like protein | HC | chr7:4764... 57 6e-08
Medtr7g115340.1 | poly(rC)-binding-like protein | HC | chr7:4764... 55 2e-07
Medtr4g127380.1 | poly(rC)-binding-like protein | HC | chr4:5286... 54 3e-07
Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | H... 51 3e-06
Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | H... 51 3e-06
Medtr5g049770.1 | RNA-binding KH domain protein | HC | chr5:2176... 50 9e-06
>Medtr2g019090.1 | RNA-binding KH domain protein | HC |
chr2:6163835-6158039 | 20130731
Length = 631
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/633 (62%), Positives = 443/633 (69%), Gaps = 27/633 (4%)
Query: 1 MGETGKRYRPRRDHDGG-----SKNQKRRVNNKDERGDDELIVYRILCPDEAXXXXXXXX 55
MGE GKR R +RD D G +KNQKRRVN++DER ELI YRILCP+E
Sbjct: 1 MGENGKRNRQQRDGDRGGRNWDNKNQKRRVNDRDERDKGELIAYRILCPNEVIGSVIGKN 60
Query: 56 XXXXNSIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXXXXXXXLNNKRTLCAAQDAL 115
NSIRQE+RAKV+VVDPFPGA +RVITI+C+ +N++ LCAAQDAL
Sbjct: 61 GKVINSIRQESRAKVKVVDPFPGAKHRVITIFCHVKNKEEIEIEDEFDNEKPLCAAQDAL 120
Query: 116 LKVHSAISNAKETVRDSXXXXXXXXXCQILVPSSQSANIIGKAGATIKRLRVKTRTNIKV 175
+KVHSAISN+ ET DS CQILVPSSQSA +IGKAGATIK+LRVKTRTNIKV
Sbjct: 121 IKVHSAISNSIETAGDSEKKRKNKDECQILVPSSQSAILIGKAGATIKQLRVKTRTNIKV 180
Query: 176 IPKDAADPAHSCAMEFDNFVLITGESEAVKRALFAVSTIMYKFSPKEDIPLDTTXXXXXX 235
+PKDAADP HSCAMEFDNFVL+ GESEAVKRALFAVSTIMYKFSPKEDIPLDTT
Sbjct: 181 VPKDAADPEHSCAMEFDNFVLV-GESEAVKRALFAVSTIMYKFSPKEDIPLDTTVPETPH 239
Query: 236 XXXXXXXXXMYPSGGLYP----------------ATNVHDLQ-GYSDAGGNTPSLYSSSF 278
+YP GGLYP AT + DL GY+D GNT LYSS
Sbjct: 240 SIIIPSELPIYPPGGLYPASDPIVQPRSFPQLIGATTMQDLHGGYADT-GNTWPLYSSPL 298
Query: 279 PIVSSLGASQSEELIVRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDSKA-YDECL 337
P+VSSLGASQSEELIVRM+CPS KIG++IGKGGGTIK +RQASGARIEVDDSKA +DECL
Sbjct: 299 PVVSSLGASQSEELIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECL 358
Query: 338 ITITSTESSSDLKSIAVEAVLLLQEKINDEDDTTVSIRLLVPSKVXXXXXXXXXXXXNEI 397
ITIT+TES+SDLKS+AVEAVLLLQEKINDEDD VSIRLLVPSKV NEI
Sbjct: 359 ITITATESTSDLKSVAVEAVLLLQEKINDEDDAPVSIRLLVPSKVIGCIIGRSGAIINEI 418
Query: 398 RKRTRADVQISRNDKPKCGDVNDELIEVVGEVDSVRDALIQIVLRLREDVLKERDIGHYP 457
RKRT+AD+QISR++KPK D NDEL+EVVGEVD VRDALIQIVLRLREDVLK +DI H
Sbjct: 419 RKRTKADIQISRSNKPKYADDNDELVEVVGEVDCVRDALIQIVLRLREDVLKNKDIDHNR 478
Query: 458 PRGAXXXXXXXXXXXXXXXXXXXXXXTAPLAYDQRPDSRTXXXXXXXXXXXXXXXXXXXX 517
G+ LAYDQR S T
Sbjct: 479 HIGSESLYASSSVLSAPPMLSSIPATAPALAYDQRTGSGTGLGMHSSRSHYGYDSYSMED 538
Query: 518 XXXXXXXXXASKLYEG--LPPLSTLEMLVPANAVSKVLGKGGTNIANIRKISGATVEISD 575
A+ LYEG LPPLSTLEM+VPANAV KV+GKGG N+ANIRKISGATVEIS+
Sbjct: 539 NGYGSMSSYATNLYEGHRLPPLSTLEMVVPANAVGKVMGKGGANLANIRKISGATVEISE 598
Query: 576 SKSGRGDRIALISGTPEQKRAAENLIQAFIMAT 608
SKS RGDR+ALISGT E+KRAAENLIQAFIMAT
Sbjct: 599 SKSYRGDRVALISGTSEEKRAAENLIQAFIMAT 631
>Medtr2g019090.2 | RNA-binding KH domain protein | HC |
chr2:6163891-6155394 | 20130731
Length = 628
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/592 (61%), Positives = 405/592 (68%), Gaps = 26/592 (4%)
Query: 1 MGETGKRYRPRRDHDGG-----SKNQKRRVNNKDERGDDELIVYRILCPDEAXXXXXXXX 55
MGE GKR R +RD D G +KNQKRRVN++DER ELI YRILCP+E
Sbjct: 1 MGENGKRNRQQRDGDRGGRNWDNKNQKRRVNDRDERDKGELIAYRILCPNEVIGSVIGKN 60
Query: 56 XXXXNSIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXXXXXXXLNNKRTLCAAQDAL 115
NSIRQE+RAKV+VVDPFPGA +RVITI+C+ +N++ LCAAQDAL
Sbjct: 61 GKVINSIRQESRAKVKVVDPFPGAKHRVITIFCHVKNKEEIEIEDEFDNEKPLCAAQDAL 120
Query: 116 LKVHSAISNAKETVRDSXXXXXXXXXCQILVPSSQSANIIGKAGATIKRLRVKTRTNIKV 175
+KVHSAISN+ ET DS CQILVPSSQSA +IGKAGATIK+LRVKTRTNIKV
Sbjct: 121 IKVHSAISNSIETAGDSEKKRKNKDECQILVPSSQSAILIGKAGATIKQLRVKTRTNIKV 180
Query: 176 IPKDAADPAHSCAMEFDNFVLITGESEAVKRALFAVSTIMYKFSPKEDIPLDTTXXXXXX 235
+PKDAADP HSCAMEFDNFVLITGESEAVKRALFAVSTIMYKFSPKEDIPLDTT
Sbjct: 181 VPKDAADPEHSCAMEFDNFVLITGESEAVKRALFAVSTIMYKFSPKEDIPLDTTVPETPH 240
Query: 236 XXXXXXXXXMYPSGGLYP----------------ATNVHDLQ-GYSDAGGNTPSLYSSSF 278
+YP GGLYP AT + DL GY+D GNT LYSS
Sbjct: 241 SIIIPSELPIYPPGGLYPASDPIVQPRSFPQLIGATTMQDLHGGYADT-GNTWPLYSSPL 299
Query: 279 PIVSSLGASQSEELIVRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDSKA-YDECL 337
P+VSSLGASQSEELIVRM+CPS KIG++IGKGGGTIK +RQASGARIEVDDSKA +DECL
Sbjct: 300 PVVSSLGASQSEELIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECL 359
Query: 338 ITITSTESSSDLKSIAVEAVLLLQEKINDEDDTTVSIRLLVPSKVXXXXXXXXXXXXNEI 397
ITIT+TES+SDLKS+AVEAVLLLQEKINDEDD VSIRLLVPSKV NEI
Sbjct: 360 ITITATESTSDLKSVAVEAVLLLQEKINDEDDAPVSIRLLVPSKVIGCIIGRSGAIINEI 419
Query: 398 RKRTRADVQISRNDKPKCGDVNDELIEVVGEVDSVRDALIQIVLRLREDVLKERDIGHYP 457
RKRT+AD+QISR++KPK D NDEL+EVVGEVD VRDALIQIVLRLREDVLK +DI H
Sbjct: 420 RKRTKADIQISRSNKPKYADDNDELVEVVGEVDCVRDALIQIVLRLREDVLKNKDIDHNR 479
Query: 458 PRGAXXXXXXXXXXXXXXXXXXXXXXTAPLAYDQRPDSRTXXXXXXXXXXXXXXXXXXXX 517
G+ LAYDQR S T
Sbjct: 480 HIGSESLYASSSVLSAPPMLSSIPATAPALAYDQRTGSGTGLGMHSSRSHYGYDSYSMED 539
Query: 518 XXXXXXXXXASKLYEG--LPPLSTLEMLVPANAVSKVLGKGGTNIANIRKIS 567
A+ LYEG LPPLSTLEM+VPANAV KV+GKGG N+ANIRK+S
Sbjct: 540 NGYGSMSSYATNLYEGHRLPPLSTLEMVVPANAVGKVMGKGGANLANIRKVS 591
>Medtr6g012630.4 | RNA-binding KH domain protein | HC |
chr6:3864952-3867538 | 20130731
Length = 538
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 139/467 (29%), Positives = 232/467 (49%), Gaps = 49/467 (10%)
Query: 5 GKRYRPRRDHDGGSKNQKRRVNNKDERG----DDELIVYRILCPDEAXXXXXXXXXXXXN 60
GKR R + D+DGG ++ ++ +R + E V+R LCP
Sbjct: 11 GKRPRSQSDYDGGGNKRRNGGDHDRDREQFVINKEDTVFRYLCPGRKIGSIIGRGGEIVK 70
Query: 61 SIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXXXXXXXLNNKRTLCAAQDALLKVHS 120
+R ET+AK+++ + PG RV+T+Y + + + A+DAL K+H
Sbjct: 71 QLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVD-----DGDKLVSPAEDALFKIHD 125
Query: 121 AISNAKETVRDSXXXXXXXXXCQILVPSSQSANIIGKAGATIKRLRVKTRTNIKVIPKDA 180
+ A++ D ++LVPS Q ++GK G ++ LR +T I+++ KD
Sbjct: 126 RVV-AEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQNLRSETGAQIRIL-KDD 183
Query: 181 ADPAHSCAMEFDNFVLITGESEAVKRALFAVSTIMYKFSPKEDIPLDTTXXXXXXXXXXX 240
PA CA+ D V I+G++ VK+AL +++ ++ + L +
Sbjct: 184 HVPA--CALRSDELVQISGDAAVVKKALHQIASRLHHNPSRTQHLLGSA----------- 230
Query: 241 XXXXMYPSGG--LYPATN---------VHDLQGYSDAGGNTP--SLYSSSFPIVSSLGAS 287
+YPSGG + P V GY G+ P S+YS+ +SS
Sbjct: 231 -VPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWPPRSMYSAPRDEISS---- 285
Query: 288 QSEELIVRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDSKAYDECLITITSTESSS 347
S+E VR+VCP+ +G VIGKGGG I +RQ SGA I+VD S D+CLITI++ E
Sbjct: 286 -SKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSSAKGDDCLITISTKEFFE 344
Query: 348 DLKSIAVEAVLLLQEKINDEDD-----TTVSIRLLVPSKVXXXXXXXXXXXXNEIRKRTR 402
+ S VEA +LLQ + +++ + + + RLLV S E+R+ T+
Sbjct: 345 ETFSPTVEAAVLLQPRCSEKSERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTK 404
Query: 403 ADVQI-SRNDKPKCGDVNDELIEVVGEVDSVRDALIQIVLRLREDVL 448
++++I S+ + PK +DE++++ G++D +DAL+Q++ RLR ++
Sbjct: 405 SNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLF 451
>Medtr6g012630.1 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 139/467 (29%), Positives = 232/467 (49%), Gaps = 49/467 (10%)
Query: 5 GKRYRPRRDHDGGSKNQKRRVNNKDERG----DDELIVYRILCPDEAXXXXXXXXXXXXN 60
GKR R + D+DGG ++ ++ +R + E V+R LCP
Sbjct: 11 GKRPRSQSDYDGGGNKRRNGGDHDRDREQFVINKEDTVFRYLCPGRKIGSIIGRGGEIVK 70
Query: 61 SIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXXXXXXXLNNKRTLCAAQDALLKVHS 120
+R ET+AK+++ + PG RV+T+Y + + + A+DAL K+H
Sbjct: 71 QLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVD-----DGDKLVSPAEDALFKIHD 125
Query: 121 AISNAKETVRDSXXXXXXXXXCQILVPSSQSANIIGKAGATIKRLRVKTRTNIKVIPKDA 180
+ A++ D ++LVPS Q ++GK G ++ LR +T I+++ KD
Sbjct: 126 RVV-AEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQNLRSETGAQIRIL-KDD 183
Query: 181 ADPAHSCAMEFDNFVLITGESEAVKRALFAVSTIMYKFSPKEDIPLDTTXXXXXXXXXXX 240
PA CA+ D V I+G++ VK+AL +++ ++ + L +
Sbjct: 184 HVPA--CALRSDELVQISGDAAVVKKALHQIASRLHHNPSRTQHLLGSA----------- 230
Query: 241 XXXXMYPSGG--LYPATN---------VHDLQGYSDAGGNTP--SLYSSSFPIVSSLGAS 287
+YPSGG + P V GY G+ P S+YS+ +SS
Sbjct: 231 -VPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWPPRSMYSAPRDEISS---- 285
Query: 288 QSEELIVRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDSKAYDECLITITSTESSS 347
S+E VR+VCP+ +G VIGKGGG I +RQ SGA I+VD S D+CLITI++ E
Sbjct: 286 -SKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSSAKGDDCLITISTKEFFE 344
Query: 348 DLKSIAVEAVLLLQEKINDEDD-----TTVSIRLLVPSKVXXXXXXXXXXXXNEIRKRTR 402
+ S VEA +LLQ + +++ + + + RLLV S E+R+ T+
Sbjct: 345 ETFSPTVEAAVLLQPRCSEKSERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTK 404
Query: 403 ADVQI-SRNDKPKCGDVNDELIEVVGEVDSVRDALIQIVLRLREDVL 448
++++I S+ + PK +DE++++ G++D +DAL+Q++ RLR ++
Sbjct: 405 SNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLF 451
>Medtr6g012630.5 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 139/467 (29%), Positives = 232/467 (49%), Gaps = 49/467 (10%)
Query: 5 GKRYRPRRDHDGGSKNQKRRVNNKDERG----DDELIVYRILCPDEAXXXXXXXXXXXXN 60
GKR R + D+DGG ++ ++ +R + E V+R LCP
Sbjct: 11 GKRPRSQSDYDGGGNKRRNGGDHDRDREQFVINKEDTVFRYLCPGRKIGSIIGRGGEIVK 70
Query: 61 SIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXXXXXXXLNNKRTLCAAQDALLKVHS 120
+R ET+AK+++ + PG RV+T+Y + + + A+DAL K+H
Sbjct: 71 QLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVD-----DGDKLVSPAEDALFKIHD 125
Query: 121 AISNAKETVRDSXXXXXXXXXCQILVPSSQSANIIGKAGATIKRLRVKTRTNIKVIPKDA 180
+ A++ D ++LVPS Q ++GK G ++ LR +T I+++ KD
Sbjct: 126 RVV-AEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQNLRSETGAQIRIL-KDD 183
Query: 181 ADPAHSCAMEFDNFVLITGESEAVKRALFAVSTIMYKFSPKEDIPLDTTXXXXXXXXXXX 240
PA CA+ D V I+G++ VK+AL +++ ++ + L +
Sbjct: 184 HVPA--CALRSDELVQISGDAAVVKKALHQIASRLHHNPSRTQHLLGSA----------- 230
Query: 241 XXXXMYPSGG--LYPATN---------VHDLQGYSDAGGNTP--SLYSSSFPIVSSLGAS 287
+YPSGG + P V GY G+ P S+YS+ +SS
Sbjct: 231 -VPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWPPRSMYSAPRDEISS---- 285
Query: 288 QSEELIVRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDSKAYDECLITITSTESSS 347
S+E VR+VCP+ +G VIGKGGG I +RQ SGA I+VD S D+CLITI++ E
Sbjct: 286 -SKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSSAKGDDCLITISTKEFFE 344
Query: 348 DLKSIAVEAVLLLQEKINDEDD-----TTVSIRLLVPSKVXXXXXXXXXXXXNEIRKRTR 402
+ S VEA +LLQ + +++ + + + RLLV S E+R+ T+
Sbjct: 345 ETFSPTVEAAVLLQPRCSEKSERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTK 404
Query: 403 ADVQI-SRNDKPKCGDVNDELIEVVGEVDSVRDALIQIVLRLREDVL 448
++++I S+ + PK +DE++++ G++D +DAL+Q++ RLR ++
Sbjct: 405 SNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLF 451
>Medtr6g012630.2 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 139/467 (29%), Positives = 232/467 (49%), Gaps = 49/467 (10%)
Query: 5 GKRYRPRRDHDGGSKNQKRRVNNKDERG----DDELIVYRILCPDEAXXXXXXXXXXXXN 60
GKR R + D+DGG ++ ++ +R + E V+R LCP
Sbjct: 11 GKRPRSQSDYDGGGNKRRNGGDHDRDREQFVINKEDTVFRYLCPGRKIGSIIGRGGEIVK 70
Query: 61 SIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXXXXXXXLNNKRTLCAAQDALLKVHS 120
+R ET+AK+++ + PG RV+T+Y + + + A+DAL K+H
Sbjct: 71 QLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVD-----DGDKLVSPAEDALFKIHD 125
Query: 121 AISNAKETVRDSXXXXXXXXXCQILVPSSQSANIIGKAGATIKRLRVKTRTNIKVIPKDA 180
+ A++ D ++LVPS Q ++GK G ++ LR +T I+++ KD
Sbjct: 126 RVV-AEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQNLRSETGAQIRIL-KDD 183
Query: 181 ADPAHSCAMEFDNFVLITGESEAVKRALFAVSTIMYKFSPKEDIPLDTTXXXXXXXXXXX 240
PA CA+ D V I+G++ VK+AL +++ ++ + L +
Sbjct: 184 HVPA--CALRSDELVQISGDAAVVKKALHQIASRLHHNPSRTQHLLGSA----------- 230
Query: 241 XXXXMYPSGG--LYPATN---------VHDLQGYSDAGGNTP--SLYSSSFPIVSSLGAS 287
+YPSGG + P V GY G+ P S+YS+ +SS
Sbjct: 231 -VPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWPPRSMYSAPRDEISS---- 285
Query: 288 QSEELIVRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDSKAYDECLITITSTESSS 347
S+E VR+VCP+ +G VIGKGGG I +RQ SGA I+VD S D+CLITI++ E
Sbjct: 286 -SKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSSAKGDDCLITISTKEFFE 344
Query: 348 DLKSIAVEAVLLLQEKINDEDD-----TTVSIRLLVPSKVXXXXXXXXXXXXNEIRKRTR 402
+ S VEA +LLQ + +++ + + + RLLV S E+R+ T+
Sbjct: 345 ETFSPTVEAAVLLQPRCSEKSERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTK 404
Query: 403 ADVQI-SRNDKPKCGDVNDELIEVVGEVDSVRDALIQIVLRLREDVL 448
++++I S+ + PK +DE++++ G++D +DAL+Q++ RLR ++
Sbjct: 405 SNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLF 451
>Medtr6g012630.3 | RNA-binding KH domain protein | HC |
chr6:3864952-3867231 | 20130731
Length = 451
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 130/443 (29%), Positives = 214/443 (48%), Gaps = 49/443 (11%)
Query: 5 GKRYRPRRDHDGGSKNQKRRVNNKDERG----DDELIVYRILCPDEAXXXXXXXXXXXXN 60
GKR R + D+DGG ++ ++ +R + E V+R LCP
Sbjct: 11 GKRPRSQSDYDGGGNKRRNGGDHDRDREQFVINKEDTVFRYLCPGRKIGSIIGRGGEIVK 70
Query: 61 SIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXXXXXXXLNNKRTLCAAQDALLKVHS 120
+R ET+AK+++ + PG RV+T+Y + + + A+DAL K+H
Sbjct: 71 QLRVETKAKIRIGETVPGCDERVVTVYSSSDETNTVD-----DGDKLVSPAEDALFKIHD 125
Query: 121 AISNAKETVRDSXXXXXXXXXCQILVPSSQSANIIGKAGATIKRLRVKTRTNIKVIPKDA 180
+ A++ D ++LVPS Q ++GK G ++ LR +T I+++ KD
Sbjct: 126 RVV-AEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQNLRSETGAQIRIL-KDD 183
Query: 181 ADPAHSCAMEFDNFVLITGESEAVKRALFAVSTIMYKFSPKEDIPLDTTXXXXXXXXXXX 240
PA CA+ D V I+G++ VK+AL +++ ++ + L +
Sbjct: 184 HVPA--CALRSDELVQISGDAAVVKKALHQIASRLHHNPSRTQHLLGSA----------- 230
Query: 241 XXXXMYPSGG--LYPATN---------VHDLQGYSDAGGNTP--SLYSSSFPIVSSLGAS 287
+YPSGG + P V GY G+ P S+YS+ +SS
Sbjct: 231 -VPSVYPSGGSLMGPTAGPPIVGMAPLVGPYGGYKSDTGDWPPRSMYSAPRDEISS---- 285
Query: 288 QSEELIVRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDSKAYDECLITITSTESSS 347
S+E VR+VCP+ +G VIGKGGG I +RQ SGA I+VD S D+CLITI++ E
Sbjct: 286 -SKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSSAKGDDCLITISTKEFFE 344
Query: 348 DLKSIAVEAVLLLQEKINDEDD-----TTVSIRLLVPSKVXXXXXXXXXXXXNEIRKRTR 402
+ S VEA +LLQ + +++ + + + RLLV S E+R+ T+
Sbjct: 345 ETFSPTVEAAVLLQPRCSEKSERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTK 404
Query: 403 ADVQI-SRNDKPKCGDVNDELIE 424
++++I S+ + PK +DE+++
Sbjct: 405 SNIRILSKENLPKIASDDDEMVQ 427
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 18/175 (10%)
Query: 290 EELIVRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDS-KAYDECLITITSTESSSD 348
E+ + R +CP KIG +IG+GG +K +R + A+I + ++ DE ++T+ S+ ++
Sbjct: 45 EDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETN 104
Query: 349 -------LKSIAVEAVLLLQEKINDED---------DTTVSIRLLVPSKVXXXXXXXXXX 392
L S A +A+ + +++ ED V+ +LLVPS
Sbjct: 105 TVDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQ 164
Query: 393 XXNEIRKRTRADVQISRNDK-PKCGDVNDELIEVVGEVDSVRDALIQIVLRLRED 446
+R T A ++I ++D P C +DEL+++ G+ V+ AL QI RL +
Sbjct: 165 IVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHN 219
>Medtr7g011080.2 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 136 bits (343), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 143/475 (30%), Positives = 213/475 (44%), Gaps = 37/475 (7%)
Query: 6 KRYRPRRDHDGGSKNQKRRVNNKDERGDDELI-------VYRILCPDEAXXXXXXXXXXX 58
KR D N KRR N DE + VYR LCP
Sbjct: 11 KRSHSHNSVDDNRTNNKRRNPNTDETTPRDTFHITQDDTVYRYLCPVRKIGSIIGRGGEI 70
Query: 59 XNSIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXXXXXXXLNNKRTLCAAQDALLKV 118
+R +T+AK+++ + PG RV+T+Y ++ +C A DAL+++
Sbjct: 71 VKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDESNDFE-----DSGEFMCPAMDALVRI 125
Query: 119 HSAI------SNAKETVRDSXXXXXXXXXCQILVPSSQSANIIGKAGATIKRLRVKTRTN 172
H + E V ++LV S Q +IGK G ++ +R +T
Sbjct: 126 HQKVIAEDLRGVEDEDVDMEKVDGGDLVTAKLLVASDQIGCVIGKGGQIVQNIRSETGAQ 185
Query: 173 IKVIPKDAADPAHSCAMEFDNFVLITGESEAVKRALFAVSTIMYKFSPKEDIPLDTTXXX 232
I+++ KD P CA+ D V I+GE VK+AL V+ ++ +P L T+
Sbjct: 186 IRIL-KDDRLPL--CALNSDELVQISGEIAVVKKALIQVAARLHD-NPSRTQHLLTSAVP 241
Query: 233 XXXXXXXXXXXXMYPSGGLYPATNVHDLQGYSDAGGNTPSLYSSS-FPIVSSLGASQSEE 291
M S G P + + G Y S +P S +E
Sbjct: 242 GVYAASGS----MVGSHGGAPIMGMAPIGGGYGGYKGDVVDYPRSMYP--GSRDEGSVKE 295
Query: 292 LIVRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDSKAY-DECLITITSTESSSDLK 350
VR VCP+ IG VIGKGGG I +RQ SGA I+VD S D+CLI I++ E D
Sbjct: 296 FSVRFVCPTANIGGVIGKGGGIINQIRQDSGANIKVDSSATEGDDCLIAISARELFEDPF 355
Query: 351 SIAVEAVLLLQ----EKIN-DEDDTTVSIRLLVPSKVXXXXXXXXXXXXNEIRKRTRADV 405
S +EA +LLQ EK+ D + + RLLV S E+R+ T+A++
Sbjct: 356 SATIEAAVLLQPRCSEKVERDSGILSFTSRLLVSSSRIGCLIGKGGSIITEMRRLTKANI 415
Query: 406 QI-SRNDKPKCGDVNDELIEVVGEVDSVRDALIQIVLRLREDVL-KERDIGHYPP 458
+I S+ D PK +DE++++ GE+D +DAL+Q++ RLR ++ KER + P
Sbjct: 416 RILSKEDLPKIATEDDEMVQISGELDIAKDALLQVLTRLRANLFDKERSVSSLLP 470
>Medtr7g011080.1 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 136 bits (343), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 143/475 (30%), Positives = 213/475 (44%), Gaps = 37/475 (7%)
Query: 6 KRYRPRRDHDGGSKNQKRRVNNKDERGDDELI-------VYRILCPDEAXXXXXXXXXXX 58
KR D N KRR N DE + VYR LCP
Sbjct: 11 KRSHSHNSVDDNRTNNKRRNPNTDETTPRDTFHITQDDTVYRYLCPVRKIGSIIGRGGEI 70
Query: 59 XNSIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXXXXXXXLNNKRTLCAAQDALLKV 118
+R +T+AK+++ + PG RV+T+Y ++ +C A DAL+++
Sbjct: 71 VKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDESNDFE-----DSGEFMCPAMDALVRI 125
Query: 119 HSAI------SNAKETVRDSXXXXXXXXXCQILVPSSQSANIIGKAGATIKRLRVKTRTN 172
H + E V ++LV S Q +IGK G ++ +R +T
Sbjct: 126 HQKVIAEDLRGVEDEDVDMEKVDGGDLVTAKLLVASDQIGCVIGKGGQIVQNIRSETGAQ 185
Query: 173 IKVIPKDAADPAHSCAMEFDNFVLITGESEAVKRALFAVSTIMYKFSPKEDIPLDTTXXX 232
I+++ KD P CA+ D V I+GE VK+AL V+ ++ +P L T+
Sbjct: 186 IRIL-KDDRLPL--CALNSDELVQISGEIAVVKKALIQVAARLHD-NPSRTQHLLTSAVP 241
Query: 233 XXXXXXXXXXXXMYPSGGLYPATNVHDLQGYSDAGGNTPSLYSSS-FPIVSSLGASQSEE 291
M S G P + + G Y S +P S +E
Sbjct: 242 GVYAASGS----MVGSHGGAPIMGMAPIGGGYGGYKGDVVDYPRSMYP--GSRDEGSVKE 295
Query: 292 LIVRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDSKAY-DECLITITSTESSSDLK 350
VR VCP+ IG VIGKGGG I +RQ SGA I+VD S D+CLI I++ E D
Sbjct: 296 FSVRFVCPTANIGGVIGKGGGIINQIRQDSGANIKVDSSATEGDDCLIAISARELFEDPF 355
Query: 351 SIAVEAVLLLQ----EKIN-DEDDTTVSIRLLVPSKVXXXXXXXXXXXXNEIRKRTRADV 405
S +EA +LLQ EK+ D + + RLLV S E+R+ T+A++
Sbjct: 356 SATIEAAVLLQPRCSEKVERDSGILSFTSRLLVSSSRIGCLIGKGGSIITEMRRLTKANI 415
Query: 406 QI-SRNDKPKCGDVNDELIEVVGEVDSVRDALIQIVLRLREDVL-KERDIGHYPP 458
+I S+ D PK +DE++++ GE+D +DAL+Q++ RLR ++ KER + P
Sbjct: 416 RILSKEDLPKIATEDDEMVQISGELDIAKDALLQVLTRLRANLFDKERSVSSLLP 470
>Medtr3g110650.2 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 122/460 (26%), Positives = 199/460 (43%), Gaps = 61/460 (13%)
Query: 37 IVYRILCPDEAXXXXXXXXXXXXNSIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXX 96
+V+R+LCP + IR ET KV++ +P PG RVIT
Sbjct: 32 VVFRLLCPASKIGGVIGKGGSIISQIRHETGVKVKIEEPVPGCEERVITFLKESEEGSAE 91
Query: 97 XXXXXLNNKRTLCAAQDALLKVHSAISNAKETV--RDSXXXXXXXXXC------------ 142
+N + +D K + + K++V DS
Sbjct: 92 QGKEVNDNDESESKVKDDEEKGNGDDNEDKDSVSVEDSQSEKVNSNPTIMRAVMLVFERV 151
Query: 143 ----------------QILVPSSQSANIIGKAGATIKRLRVKTRTNIKVIPKDAADPAHS 186
++L+ S+Q I+GK G+ IKR+ ++ I+++PK+ PA
Sbjct: 152 AEDEGGDESKKGYFGLRLLILSNQVGCILGKGGSVIKRMSAESGAQIRILPKEEI-PA-- 208
Query: 187 CAMEFDNFVLITGESEAVKRALFAVSTIMYKFSPK--EDIPLDTTXXXXXXXXXXXXXXX 244
CA + D V ITG E V+RAL +V + + SP+ E +P + T
Sbjct: 209 CASDSDELVQITGGVEVVRRALQSVFQQLVENSPRDHESLPTNLTGPSS----------- 257
Query: 245 MYPSGGLYPATNVHDLQGYSDAGGNTPSLYSSSFPIVSSL--GA------SQSEELIVRM 296
+ G P QG S A G S P++ GA E L R+
Sbjct: 258 -HSYGQFPPNKRTFAGQGASFATGPNEIPVFHSAPMIPKFHEGAILGRMRPPPEILTFRL 316
Query: 297 VCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDS-KAYDECLITITSTESSSDLKSIAVE 355
+CPS +G +IGKGG IK ++Q + + I+V ++ ++C+I I+ D S E
Sbjct: 317 LCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISGPAHPDDRISPVQE 376
Query: 356 AVLLLQEKIN----DEDDTTVSIRLLVPSKVXXXXXXXXXXXXNEIRKRTRADVQISRND 411
A+ +Q +I+ D + ++ R++V SK E+R + A +++ D
Sbjct: 377 AIFRVQNRISRAMLDSKEHSMLARVIVSSKHIGCLLGKGGSIIAEMRNLSGAHIRMLGKD 436
Query: 412 K-PKCGDVNDELIEVVGEVDSVRDALIQIVLRLREDVLKE 450
K PKC +DE+I+V G +++V DAL+QI RLR + ++
Sbjct: 437 KGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFFRD 476
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 47/70 (67%)
Query: 538 STLEMLVPANAVSKVLGKGGTNIANIRKISGATVEISDSKSGRGDRIALISGTPEQKRAA 597
+T+E++VP V+++ G+ G + I +IS A V I+D G + +ISGTPEQ AA
Sbjct: 588 TTVEVVVPRALVAEIYGENGECLKQILQISDANVIITDPIPGAVETKIIISGTPEQTNAA 647
Query: 598 ENLIQAFIMA 607
++LIQAF+M+
Sbjct: 648 QSLIQAFVMS 657
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 31 RGDDELIVYRILCPDEAXXXXXXXXXXXXNSIRQETRAKVQVVDPFPGATYRVITIYCYX 90
R E++ +R+LCP E+ ++QET ++++V++ PG+ +I I
Sbjct: 306 RPPPEILTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIII---- 361
Query: 91 XXXXXXXXXXXLNNKRTLCAAQDALLKVHSAISNAKETVRDSXXXXXXXXXCQILVPSSQ 150
+ + Q+A+ +V + IS A ++ +++V S
Sbjct: 362 --------SGPAHPDDRISPVQEAIFRVQNRISRAMLDSKEH------SMLARVIVSSKH 407
Query: 151 SANIIGKAGATIKRLRVKTRTNIKVIPKDAADPAHSCAMEFDNFVLITGESEAVKRALFA 210
++GK G+ I +R + +I+++ KD C E D + ++G EAV AL
Sbjct: 408 IGCLLGKGGSIIAEMRNLSGAHIRMLGKDKGP---KCVSEDDEVIQVSGVIEAVHDALLQ 464
Query: 211 VST 213
++T
Sbjct: 465 ITT 467
>Medtr3g110650.1 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 122/460 (26%), Positives = 199/460 (43%), Gaps = 61/460 (13%)
Query: 37 IVYRILCPDEAXXXXXXXXXXXXNSIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXX 96
+V+R+LCP + IR ET KV++ +P PG RVIT
Sbjct: 32 VVFRLLCPASKIGGVIGKGGSIISQIRHETGVKVKIEEPVPGCEERVITFLKESEEGSAE 91
Query: 97 XXXXXLNNKRTLCAAQDALLKVHSAISNAKETV--RDSXXXXXXXXXC------------ 142
+N + +D K + + K++V DS
Sbjct: 92 QGKEVNDNDESESKVKDDEEKGNGDDNEDKDSVSVEDSQSEKVNSNPTIMRAVMLVFERV 151
Query: 143 ----------------QILVPSSQSANIIGKAGATIKRLRVKTRTNIKVIPKDAADPAHS 186
++L+ S+Q I+GK G+ IKR+ ++ I+++PK+ PA
Sbjct: 152 AEDEGGDESKKGYFGLRLLILSNQVGCILGKGGSVIKRMSAESGAQIRILPKEEI-PA-- 208
Query: 187 CAMEFDNFVLITGESEAVKRALFAVSTIMYKFSPK--EDIPLDTTXXXXXXXXXXXXXXX 244
CA + D V ITG E V+RAL +V + + SP+ E +P + T
Sbjct: 209 CASDSDELVQITGGVEVVRRALQSVFQQLVENSPRDHESLPTNLTGPSS----------- 257
Query: 245 MYPSGGLYPATNVHDLQGYSDAGGNTPSLYSSSFPIVSSL--GA------SQSEELIVRM 296
+ G P QG S A G S P++ GA E L R+
Sbjct: 258 -HSYGQFPPNKRTFAGQGASFATGPNEIPVFHSAPMIPKFHEGAILGRMRPPPEILTFRL 316
Query: 297 VCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDS-KAYDECLITITSTESSSDLKSIAVE 355
+CPS +G +IGKGG IK ++Q + + I+V ++ ++C+I I+ D S E
Sbjct: 317 LCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISGPAHPDDRISPVQE 376
Query: 356 AVLLLQEKIN----DEDDTTVSIRLLVPSKVXXXXXXXXXXXXNEIRKRTRADVQISRND 411
A+ +Q +I+ D + ++ R++V SK E+R + A +++ D
Sbjct: 377 AIFRVQNRISRAMLDSKEHSMLARVIVSSKHIGCLLGKGGSIIAEMRNLSGAHIRMLGKD 436
Query: 412 K-PKCGDVNDELIEVVGEVDSVRDALIQIVLRLREDVLKE 450
K PKC +DE+I+V G +++V DAL+QI RLR + ++
Sbjct: 437 KGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFFRD 476
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 47/70 (67%)
Query: 538 STLEMLVPANAVSKVLGKGGTNIANIRKISGATVEISDSKSGRGDRIALISGTPEQKRAA 597
+T+E++VP V+++ G+ G + I +IS A V I+D G + +ISGTPEQ AA
Sbjct: 588 TTVEVVVPRALVAEIYGENGECLKQILQISDANVIITDPIPGAVETKIIISGTPEQTNAA 647
Query: 598 ENLIQAFIMA 607
++LIQAF+M+
Sbjct: 648 QSLIQAFVMS 657
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 31 RGDDELIVYRILCPDEAXXXXXXXXXXXXNSIRQETRAKVQVVDPFPGATYRVITIYCYX 90
R E++ +R+LCP E+ ++QET ++++V++ PG+ +I I
Sbjct: 306 RPPPEILTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIII---- 361
Query: 91 XXXXXXXXXXXLNNKRTLCAAQDALLKVHSAISNAKETVRDSXXXXXXXXXCQILVPSSQ 150
+ + Q+A+ +V + IS A ++ +++V S
Sbjct: 362 --------SGPAHPDDRISPVQEAIFRVQNRISRAMLDSKEH------SMLARVIVSSKH 407
Query: 151 SANIIGKAGATIKRLRVKTRTNIKVIPKDAADPAHSCAMEFDNFVLITGESEAVKRALFA 210
++GK G+ I +R + +I+++ KD C E D + ++G EAV AL
Sbjct: 408 IGCLLGKGGSIIAEMRNLSGAHIRMLGKDKGP---KCVSEDDEVIQVSGVIEAVHDALLQ 464
Query: 211 VST 213
++T
Sbjct: 465 ITT 467
>Medtr4g008080.1 | RNA-binding KH domain protein | HC |
chr4:1379696-1384039 | 20130731
Length = 605
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 155/315 (49%), Gaps = 28/315 (8%)
Query: 142 CQILVPSSQSANIIGKAGATIKRLRVKTRTNIKVIPKDAADPAHSCAMEFDNFVLITGES 201
C++L PS Q ++G+ G ++++R ++ ++++PKD + D F+ ITG
Sbjct: 101 CRLLAPSYQVGCVLGRGGKIVEKIRQESGAQVRILPKDHS----PIPPPGDEFIQITGNF 156
Query: 202 EAVKRALFAVSTIMYKFSPKEDIPLDTTXXXXXXXXXXXXXXXMYPSGGLYPATNVHDLQ 261
AVK+AL AVS+ + D YP G +P H +
Sbjct: 157 NAVKKALLAVSSCLQ----------DNVGNSGGFKSSGGAQVEPYPQRGPHPPD--HHSR 204
Query: 262 GYSDAGGNTPSLYSSSFPIVSSLGASQSEELIVRMVCPSYKIGRVIGKGGGTIKSVRQAS 321
GYS G+ + + + EE++ +M+C K+G +IGKGG +++++ +
Sbjct: 205 GYSSFPGSENARPAHRMFV--------EEEVVYKMLCQQDKVGSLIGKGGSVVRALQNET 256
Query: 322 GARIE-VDDSKAYDECLITITSTESSSDLKSIAVEAVLLLQEKIND---EDDTTVSIRLL 377
GA I+ VD DE ++ I++ E+S S A +AV+ + ++ + E V RLL
Sbjct: 257 GASIQIVDAGPDSDERVVVISALENSDQKHSPAQDAVIRVHGRLTEIGFEHSNAVVARLL 316
Query: 378 VPSKVXXXXXXXXXXXXNEIRKRTRADVQISRNDKPKCGDVNDELIEVVGEVDSVRDALI 437
V S +E+R+ T A+++I ++ K N+E+++V+G + SV+DAL
Sbjct: 317 VRSPQVGCLLGKGGHVISEMRRVTGANIRIFSKEQIKYISHNEEVVQVIGTLQSVQDALF 376
Query: 438 QIVLRLREDVLKERD 452
I R+RE ++ ++
Sbjct: 377 HITSRIRETIIPMKN 391
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 77/180 (42%), Gaps = 23/180 (12%)
Query: 34 DELIVYRILCPDEAXXXXXXXXXXXXNSIRQETRAKVQVVDPFPGATYRVITIYCYXXXX 93
+E +VY++LC + +++ ET A +Q+VD P + RV+ I
Sbjct: 224 EEEVVYKMLCQQDKVGSLIGKGGSVVRALQNETGASIQIVDAGPDSDERVVVISALE--- 280
Query: 94 XXXXXXXXLNNKRTLCAAQDALLKVHSAISNAKETVRDSXXXXXXXXXCQILVPSSQSAN 153
N+ + AQDA+++VH ++ + ++LV S Q
Sbjct: 281 ---------NSDQKHSPAQDAVIRVHGRLT-------EIGFEHSNAVVARLLVRSPQVGC 324
Query: 154 IIGKAGATIKRLRVKTRTNIKVIPKDAADPAHSCAMEFDNFVLITGESEAVKRALFAVST 213
++GK G I +R T NI++ K+ + V + G ++V+ ALF +++
Sbjct: 325 LLGKGGHVISEMRRVTGANIRIFSKEQI----KYISHNEEVVQVIGTLQSVQDALFHITS 380
>Medtr4g093650.1 | RNA-binding KH domain protein | HC |
chr4:37099130-37092340 | 20130731
Length = 616
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 121/439 (27%), Positives = 195/439 (44%), Gaps = 50/439 (11%)
Query: 37 IVYRILCPDEAXXXXXXXXXXXXNSIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXX 96
+V+R+LC S++Q T A++++ D RVI +
Sbjct: 20 VVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVIVVIV-------- 71
Query: 97 XXXXXLNNKRTLCA-AQDALLKVHSAISNAKETVRDSXXXXXXXXXCQILVPSSQSANII 155
LN + Q+ALLKV I + D C++LV + Q+ +I
Sbjct: 72 ----NLNGDGDVSLNPQEALLKVFERILDVAAAESDGNGVGDRVVSCRLLVNAGQAGGVI 127
Query: 156 GKAGATIKRLRVKTRTNIKVIPKDAADPAHSCAMEFDNFVLITGESEAVKRALFAVSTIM 215
GK G + ++R T I+V+ D +C D + I G + +VK+AL AV+ +
Sbjct: 128 GKGGMVVAKIRADTGCRIRVL----NDKLPACTKPSDEIIEIQGIASSVKKALVAVAGRL 183
Query: 216 YKFSPKEDIPLDTTXXXXXX-XXXXXXXXXMYPSGGLYPATNVHDLQ---GYSDAGGNTP 271
++ PLD T P GL LQ S + +
Sbjct: 184 -----QDCPPLDRTKMMGTRPYEAFQNETSAVPHEGLTDLNMDFRLQRSSAISTSSIRSN 238
Query: 272 SLYSSSFPI------VSSLG-ASQSEELIVRMVCPSYKIGRVIGKGGGTIKSVRQASGAR 324
+ S S P+ VSSL + +E+ R++C +IG V+GKGG +K+++ +GA
Sbjct: 239 GVPSKSHPLSVEDNRVSSLDPEALKQEVTFRILCSGDRIGAVLGKGGSIVKALQNETGAN 298
Query: 325 IEVDDSKAYDEC---LITITSTESSSDLKSIAVEAVLLLQ--------EKIND---EDDT 370
I V EC LITIT+ E+ S A EAV+L+ EK+ D ++
Sbjct: 299 ISV--GPPVVECEDRLITITALENPESRFSPAQEAVVLVFCRSIECCIEKVVDWRSNKES 356
Query: 371 TVSIRLLVPSKVXXXXXXXXXXXXNEIRKRTRADVQISRNDK-PKCGDVNDELIEVVGEV 429
+V+ +L+VPS +E+RK T ++I+RN + PKC ND+++++ GE+
Sbjct: 357 SVTAQLVVPSNQVGVLLGKGGAIVSEMRKATWTSIRITRNGEVPKCASFNDQVVQISGEL 416
Query: 430 DSVRDALIQIVLRLREDVL 448
+VRDAL RLR+ +
Sbjct: 417 PNVRDALYNATRRLRDHIF 435
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 538 STLEMLVPANAVSKVLGKGGTNIANIRKISGATVEISDSKSGRGDRIALI-SGTPEQKRA 596
+T+E+++P + + V G+ G+N+ +R+ISGA V + + G DR ++ SGTP++ +A
Sbjct: 543 TTVEIMLPNDIIGSVYGENGSNLDQLRQISGAKVVFHEPRPGTSDRAKIVLSGTPDETQA 602
Query: 597 AENLIQAFIM 606
A++L+QA+I+
Sbjct: 603 AQSLLQAYIL 612
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 16/190 (8%)
Query: 21 QKRRVNNKDERGDDELIVYRILCPDEAXXXXXXXXXXXXNSIRQETRAKVQVVDPFPGAT 80
+ RV++ D + + +RILC + +++ ET A + V P
Sbjct: 250 EDNRVSSLDPEALKQEVTFRILCSGDRIGAVLGKGGSIVKALQNETGANISVGPPVVECE 309
Query: 81 YRVITIYCYXXXXXXXXXXXXLNNKRTLCAAQDALLKVHS-AISNAKETVRDSXXXXXXX 139
R+ITI N + AQ+A++ V +I E V D
Sbjct: 310 DRLITITALE------------NPESRFSPAQEAVVLVFCRSIECCIEKVVDWRSNKESS 357
Query: 140 XXCQILVPSSQSANIIGKAGATIKRLRVKTRTNIKVIPKDAADPAHSCAMEFDNFVLITG 199
Q++VPS+Q ++GK GA + +R T T+I+ I ++ P CA D V I+G
Sbjct: 358 VTAQLVVPSNQVGVLLGKGGAIVSEMRKATWTSIR-ITRNGEVP--KCASFNDQVVQISG 414
Query: 200 ESEAVKRALF 209
E V+ AL+
Sbjct: 415 ELPNVRDALY 424
>Medtr3g091800.1 | RNA-binding KH domain protein | HC |
chr3:41793839-41789438 | 20130731
Length = 646
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 112/451 (24%), Positives = 191/451 (42%), Gaps = 47/451 (10%)
Query: 39 YRILCPDEAXXXXXXXXXXXXNSIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXXXX 98
YR+LC D SIRQ T A + V +P G R+I I
Sbjct: 65 YRLLCHDLRAGGVIGKSGSIIKSIRQHTGAWINVHEPVAGDEERIIEI-------SDTRR 117
Query: 99 XXXLNNKRTLCAAQDALLKVHSAISNAKETVRDSX------XXXXXXXXCQILVPSSQSA 152
AQ+ALL +H + D +++V
Sbjct: 118 RDPDGRMPQFSPAQEALLLIHERLLENDPGFEDEEDYGGGRGGGGKRVSSRLVVSKMHVG 177
Query: 153 NIIGKAGATIKRLRVKTRTNIKVIPKDAADPAHSCAMEFDNFVLITGESEAVKRALFAVS 212
+++GK G I+++R++T+T I+++P+D+ P C + V +TG+ VK A +S
Sbjct: 178 SLLGKGGKIIEQMRIETKTQIRILPRDSYLP--RCVSMSEEIVQVTGDIHNVKNAFLVIS 235
Query: 213 TIMYKFSPKEDIPLDTTXXXXXXXXXXXXXXXMYP----------SGGLYPATNVHDLQG 262
+ + + S D + +P SG P+ + G
Sbjct: 236 SRL-RESQHRDRSGERGGGGGQFHGRGHSPERFFPPDDDYLPHVSSGSRRPSV---ERSG 291
Query: 263 YSDAGGNTPSLYSSSFPIVSSLGASQS----------EELIVRMVCPSYKIGRVIGKGGG 312
+ T S ++ I S+ + E+LI R++CP ++ R++G+ GG
Sbjct: 292 FGSRIATTNSRNNNHASISYSMDQGAAPVAHDEQPFYEDLIFRILCPVDRVDRIVGESGG 351
Query: 313 TIKSVRQASGARIEVDDS-KAYDECLITITSTESSSDLKSIAVEAVLLLQEKINDEDDTT 371
++ ++ G +++ D DE ++ ITS E +D A EA+L +Q I D D+
Sbjct: 352 ILELLQDRVGVDVQISDRVGGSDEQMVIITSEEGPNDTMFPAQEALLHIQTHIVDLSDSI 411
Query: 372 VSIRLLVPSKVXXXXXXXXXXXXNEIRKRTRADVQI-SRNDKPKCGDVNDELIEVVGEVD 430
++ RL+VPS +EI + T A VQI R + P C DEL+++VGE++
Sbjct: 412 ITTRLIVPSS-DIECLDGKNASLSEIERSTGASVQILPREELPPCIANTDELVQIVGEIE 470
Query: 431 SVRDALIQIVLRLREDVLKERDIGHY---PP 458
+ R+ ++ + +LR V RDI + PP
Sbjct: 471 AARNVILDVTAKLRSYVY--RDILQWDTVPP 499
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 47/71 (66%)
Query: 538 STLEMLVPANAVSKVLGKGGTNIANIRKISGATVEISDSKSGRGDRIALISGTPEQKRAA 597
S LE+++P AV K+L K + +A I ++SGA V++ + + ++I ISGTPEQ
Sbjct: 571 SILEVVIPEYAVPKLLAKSKSKLAQISELSGANVKLVEDRPDEKEKIIQISGTPEQAERG 630
Query: 598 ENLIQAFIMAT 608
++L+Q FI++T
Sbjct: 631 QSLLQGFILST 641
>Medtr5g031720.1 | RNA-binding KH domain protein | HC |
chr5:13608841-13602499 | 20130731
Length = 596
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 103/429 (24%), Positives = 185/429 (43%), Gaps = 41/429 (9%)
Query: 37 IVYRILCPDEAXXXXXXXXXXXXNSIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXX 96
I +R++C + +R+ET K+ D G RVI +
Sbjct: 39 IAFRLVCHSSTVGGLIGSSGSIVSQLRRETGCKIHCEDAVVGTDDRVILVIGSMSDRKGI 98
Query: 97 XXXXXLNNKRTLCAAQDALLKVHSAISNAKETVRDSXXXXXXXXXCQILVPSSQSANIIG 156
+ + + AQ+ +++V + +S ++L SSQ I+G
Sbjct: 99 VLG---DREMEVSNAQEGVVRVFDRVWGL-----ESEKGGNGEVYGKLLAHSSQVGAIVG 150
Query: 157 KAGATIKRLRVKTRTNIKVIPKDAADPAHSCAMEFDNFVLITGESEAVKRALFAVSTIMY 216
K G I +R + +NI+V P A CA + + +LITGES AVK+AL VS +
Sbjct: 151 KGGKNISNIRNNSGSNIRVCP------APHCAAKDEELILITGESLAVKKALIYVSYCLQ 204
Query: 217 KFSPKEDIPLDTTXXXXXXXXXXXXXXXMYPSGGLYPATN--VHDLQGYS--DAGGNTPS 272
P + L+T Y L+P N + ++G S DA T +
Sbjct: 205 DCPPMGKVSLNTPPTINSSDRSTS-----YTHEDLFPHLNSWLPSMEGLSINDASKQTTN 259
Query: 273 LYSSSFPIVSSLGASQSEELIVRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDSKA 332
+S + S G+ + ++ R++C + G VIGK G +++ +GA I
Sbjct: 260 ANGNSS--LDSKGSGHA--VVFRLLCSNNVAGSVIGKKGSIVRTFEIRTGASIVFAPPLG 315
Query: 333 -YDECLITITSTESSSDLKSIAVEAVLLLQEKINDED-----------DTTVSIRLLVPS 380
Y+E ++TI++ E+ S A +AV+L+ +I ++ ++ V+ RLL+ +
Sbjct: 316 QYEERIVTISAFENLESSNSPAQDAVILVFTRIAEDHIRNGFQPATAVESPVTARLLITT 375
Query: 381 KVXXXXXXXXXXXXNEIRKRTRADVQISRNDK-PKCGDVNDELIEVVGEVDSVRDALIQI 439
+E+R+ + AD+Q+ + P D ND ++++ G V +AL +I
Sbjct: 376 STLHLLTGNEGQVISELRQVSGADIQLLHGEPIPNASD-NDVVVQITGGYRCVENALRKI 434
Query: 440 VLRLREDVL 448
+R++ L
Sbjct: 435 TSIIRDNPL 443
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 538 STLEMLVPANAVSKVLGKGGTNIANIRKISGATVEISD-SKSGRGDRIALISGTPEQKRA 596
+T+E++V + V G+ G N+ IR+ISGA V + D S +G +ISGTP+Q A
Sbjct: 522 TTVEIIVSEHVFGSVYGEDGGNLDRIRQISGADVTVFDPSSTGTSGGKVVISGTPDQTFA 581
Query: 597 AENLIQAFI 605
A++L+QAFI
Sbjct: 582 AQSLLQAFI 590
>Medtr2g009650.1 | RNA-binding KH domain protein | HC |
chr2:2001720-2009761 | 20130731
Length = 766
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 114/474 (24%), Positives = 196/474 (41%), Gaps = 83/474 (17%)
Query: 37 IVYRILCPDEAXXXXXXXXXXXXNSIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXX 96
+ +R+LC +++ T AK+++ D + RVI +
Sbjct: 48 VAFRLLCNSSRIGGVIGKSGTVIKNLQLTTGAKIRIEDSPNESPDRVIMVIGASNIDGKV 107
Query: 97 XXXXXLNNKRTL--CAAQDALLKVHSAISNAKETVRDSXXXXXXXXXCQILVPSSQSANI 154
+ + AQ+ALL+V I + + C+++ S+Q+ ++
Sbjct: 108 MVRSHSGDGEAIEVSKAQEALLRVFDRILEVAAEM-EGIELGDRTVSCRLVADSAQAGSV 166
Query: 155 IGKAGATIKRLRVKTRTNIKVIPKDAADPAHSCAMEFDNFVLITGESEAVKRALFAVS-- 212
IGK G +++++ T I V D +C D + I G +VK+AL AVS
Sbjct: 167 IGKGGKVVEKIKKDTGCKIWV----CKDNLPACISSPDEVIEIEGSVSSVKKALVAVSRN 222
Query: 213 --------------------------------TIM------YKFSPKED---IPLDT-TX 230
T+M + +P+E +P +T T
Sbjct: 223 LQDRHHADRTKMTGQNSHEVIHHEALVGVPRETLMSVPRETFIGAPRETLTAVPCETLTD 282
Query: 231 XXXXXXXXXXXXXXMYPSGGLYPATNVHDLQGYSDAGGNTPSLYSSSFPIVSSLGA-SQS 289
+ PS AT VH L S+ VSSL +
Sbjct: 283 LHVDHLLQRRSALSILPSSSNSYATGVHSL--------------SAEVNRVSSLEPKAHQ 328
Query: 290 EELIVRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDSKAYDEC---LITITSTESS 346
+E+ +++C + +IG VIGKGG I++++ +GA + V S A EC LITIT++ES
Sbjct: 329 QEITFKIICSNDRIGGVIGKGGNIIRALQSETGATVSVGPSVA--ECEDRLITITASESP 386
Query: 347 SDLKSIAVEAVLL---------LQEKINDEDDT--TVSIRLLVPSKVXXXXXXXXXXXXN 395
S A +A +L +++ I+ +T +V+ +L+V S +
Sbjct: 387 ESRYSPAQKATVLVFSRSVEAGIEKGIDSGLNTGSSVTAQLVVSSNQVGCLLGKGGVIVS 446
Query: 396 EIRKRTRADVQISRNDK-PKCGDVNDELIEVVGEVDSVRDALIQIVLRLREDVL 448
E+RK T A ++I DK KC ND+++++ GE +V+DAL RLR+++
Sbjct: 447 EMRKATGASIRIVGTDKVSKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLF 500
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 52/69 (75%)
Query: 538 STLEMLVPANAVSKVLGKGGTNIANIRKISGATVEISDSKSGRGDRIALISGTPEQKRAA 597
+T+E++VP + + V G+ G+N+A +R+ISGA V I + + G DR ++SG+P++ +AA
Sbjct: 694 TTIEIVVPEDTLYLVYGENGSNLARLRQISGAKVVIHEPRPGTSDRTIVLSGSPDETQAA 753
Query: 598 ENLIQAFIM 606
++L+QAFI+
Sbjct: 754 QSLLQAFIL 762
>Medtr1g070380.3 | poly(rC)-binding-like protein | HC |
chr1:31149687-31143883 | 20130731
Length = 568
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 14/181 (7%)
Query: 38 VYRILCPDEAXXXXXXXXXXXXNSIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXXX 97
V+R+L P + I +ETRA+V+++D G R + +
Sbjct: 166 VFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEP----- 220
Query: 98 XXXXLNNKRTLCAAQDALLKVHSAISNAKETVRDSXXXXXXXXXCQILVPSSQSANIIGK 157
R + A + LL+VH ++N D+ ++LV +Q+ ++IGK
Sbjct: 221 -------DRPIPPAVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGK 273
Query: 158 AGATIKRLRVKTRTNIKVIPKDAADPAHSCAMEFDNFVLITGESEAVKRALFAVSTIMYK 217
G+TIK + T NI+++ +A+ A+ D+ V I GE V +A+ ++ + K
Sbjct: 274 QGSTIKIFQDSTGCNIRIL--GSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRK 331
Query: 218 F 218
F
Sbjct: 332 F 332
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 539 TLEMLVPANAVSKVLGKGGTNIANIRKISGATVEISDSKSGRGDRIALISGTPEQKRAAE 598
T M +P + V+G G NI+ IR+ SGA++ I +++ G+ ISGT Q +AA+
Sbjct: 442 TQHMQIPLSFADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQ 501
Query: 599 NLIQAFI 605
L+Q F+
Sbjct: 502 QLVQNFM 508
>Medtr1g070380.2 | poly(rC)-binding-like protein | HC |
chr1:31149683-31143883 | 20130731
Length = 568
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 14/181 (7%)
Query: 38 VYRILCPDEAXXXXXXXXXXXXNSIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXXX 97
V+R+L P + I +ETRA+V+++D G R + +
Sbjct: 166 VFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEP----- 220
Query: 98 XXXXLNNKRTLCAAQDALLKVHSAISNAKETVRDSXXXXXXXXXCQILVPSSQSANIIGK 157
R + A + LL+VH ++N D+ ++LV +Q+ ++IGK
Sbjct: 221 -------DRPIPPAVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGK 273
Query: 158 AGATIKRLRVKTRTNIKVIPKDAADPAHSCAMEFDNFVLITGESEAVKRALFAVSTIMYK 217
G+TIK + T NI+++ +A+ A+ D+ V I GE V +A+ ++ + K
Sbjct: 274 QGSTIKIFQDSTGCNIRIL--GSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRK 331
Query: 218 F 218
F
Sbjct: 332 F 332
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 539 TLEMLVPANAVSKVLGKGGTNIANIRKISGATVEISDSKSGRGDRIALISGTPEQKRAAE 598
T M +P + V+G G NI+ IR+ SGA++ I +++ G+ ISGT Q +AA+
Sbjct: 442 TQHMQIPLSFADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQ 501
Query: 599 NLIQAFI 605
L+Q F+
Sbjct: 502 QLVQNFM 508
>Medtr1g070380.1 | poly(rC)-binding-like protein | HC |
chr1:31149691-31143604 | 20130731
Length = 567
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 15/181 (8%)
Query: 38 VYRILCPDEAXXXXXXXXXXXXNSIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXXX 97
V+R+L P + I +ETRA+V+++D G R + +
Sbjct: 166 VFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEP----- 220
Query: 98 XXXXLNNKRTLCAAQDALLKVHSAISNAKETVRDSXXXXXXXXXCQILVPSSQSANIIGK 157
R + A + LL+VH ++N D+ ++LV +Q+ ++IGK
Sbjct: 221 -------DRPIPPAVEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGK 273
Query: 158 AGATIKRLRVKTRTNIKVIPKDAADPAHSCAMEFDNFVLITGESEAVKRALFAVSTIMYK 217
G+TIK + T NI+++ ++ A+ D+ V I GE V +A+ ++ + K
Sbjct: 274 QGSTIKIFQDSTGCNIRIL---GSEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRK 330
Query: 218 F 218
F
Sbjct: 331 F 331
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 539 TLEMLVPANAVSKVLGKGGTNIANIRKISGATVEISDSKSGRGDRIALISGTPEQKRAAE 598
T M +P + V+G G NI+ IR+ SGA++ I +++ G+ ISGT Q +AA+
Sbjct: 441 TQHMQIPLSFADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQ 500
Query: 599 NLIQAFI 605
L+Q F+
Sbjct: 501 QLVQNFM 507
>Medtr7g080630.5 | poly(rC)-binding-like protein | HC |
chr7:30700621-30706773 | 20130731
Length = 306
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 94/182 (51%), Gaps = 16/182 (8%)
Query: 281 VSSLGASQSEELIVRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDSKAYDECLITI 340
+S+ ++ +++I R+V PS +IG+VIGK G I+ +R+ + A I++ D+ A E + I
Sbjct: 89 LSAAKRAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVII 148
Query: 341 TSTESSSDLKSIAVEAVLLLQEKINDEDDTTV-------------SIRLLVPSKVXXXXX 387
S++ + ++ + A +A+ + I ED+++ +IRLL+
Sbjct: 149 ISSKDNDEMVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLI 208
Query: 388 XXXXXXXNEIRKRTRADVQI-SRNDKPKCGDVN--DELIEVVGEVDSVRDALIQIVLRLR 444
++R + A + + + + P C + D ++++ G+V +V AL +I +LR
Sbjct: 209 GMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLR 268
Query: 445 ED 446
E+
Sbjct: 269 EN 270
>Medtr7g080630.4 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707328 | 20130731
Length = 379
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 98/190 (51%), Gaps = 16/190 (8%)
Query: 273 LYSSSFPIVSSLGASQSEELIVRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDSKA 332
L ++S +S+ ++ +++I R+V PS +IG+VIGK G I+ +R+ + A I++ D+ A
Sbjct: 81 LGTASSAELSAAKRAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIA 140
Query: 333 YDECLITITSTESSSDLKSIAVEAVLLLQEKINDEDDTTV-------------SIRLLVP 379
E + I S++ + ++ + A +A+ + I ED+++ +IRLL+
Sbjct: 141 RHEERVIIISSKDNDEMVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIA 200
Query: 380 SKVXXXXXXXXXXXXNEIRKRTRADVQI-SRNDKPKCGDVN--DELIEVVGEVDSVRDAL 436
++R + A + + + + P C + D ++++ G+V +V AL
Sbjct: 201 GSQAGGLIGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKAL 260
Query: 437 IQIVLRLRED 446
+I +LRE+
Sbjct: 261 EEIGCQLREN 270
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 120/327 (36%), Gaps = 61/327 (18%)
Query: 9 RPRRDHDGGSKNQKRRVNNKDERGDDELIVYRILCPDEAXXXXXXXXXXXXNSIRQETRA 68
R R D D G+ + K +G D +++RI+ P + IR+ TRA
Sbjct: 74 RRRDDEDLGTASSAELSAAKRAKGQD--VIFRIVVPSKQIGKVIGKEGCRIQKIREMTRA 131
Query: 69 KVQVVDPFPGATYRVITIYCYXXXXXXXXXXXXLNNKRTLCAAQDALLKVHSAISNAKET 128
+++ D RVI I +N + A+ AL ++ + I +
Sbjct: 132 NIKIADAIARHEERVIII-------------SSKDNDEMVTDAEKALEQIANLILKEDNS 178
Query: 129 VRDSXXXXX---XXXXCQILVPSSQSANIIGKAGATIKRLRVKTRTNIKVIPKDAADPAH 185
D+ ++L+ SQ+ +IG +G I++LR + I V+ P
Sbjct: 179 SFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKLRNSSGAMITVLAPSQL-PLC 237
Query: 186 SCAMEFDNFVLITGESEAVKRALFAVSTIMYKFSPKEDIPLDTTXXXXXXXXXXXXXXXM 245
+ A E D V ++G+ V +AL + + + P++ I + T
Sbjct: 238 ASAHESDRVVQLSGDVSTVMKALEEIGCQLRENPPRQVISISPT---------------- 281
Query: 246 YPSGGLYPATNVHDLQGYSDAGGNTPSLYSSSFPIVSSLGASQSEELIVRMVCPSYKIGR 305
Y + P+ P L +S V+ M+ +G
Sbjct: 282 YNYAAIRPS---------------QPYLDPNSVDYVT-----------FEMLISETMVGG 315
Query: 306 VIGKGGGTIKSVRQASGARIEVDDSKA 332
+IG+ G I +R SGA I+V K
Sbjct: 316 LIGRCGSNISRIRNESGAMIKVYGGKG 342
>Medtr7g080630.1 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 379
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 98/190 (51%), Gaps = 16/190 (8%)
Query: 273 LYSSSFPIVSSLGASQSEELIVRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDSKA 332
L ++S +S+ ++ +++I R+V PS +IG+VIGK G I+ +R+ + A I++ D+ A
Sbjct: 81 LGTASSAELSAAKRAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIA 140
Query: 333 YDECLITITSTESSSDLKSIAVEAVLLLQEKINDEDDTTV-------------SIRLLVP 379
E + I S++ + ++ + A +A+ + I ED+++ +IRLL+
Sbjct: 141 RHEERVIIISSKDNDEMVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIA 200
Query: 380 SKVXXXXXXXXXXXXNEIRKRTRADVQI-SRNDKPKCGDVN--DELIEVVGEVDSVRDAL 436
++R + A + + + + P C + D ++++ G+V +V AL
Sbjct: 201 GSQAGGLIGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKAL 260
Query: 437 IQIVLRLRED 446
+I +LRE+
Sbjct: 261 EEIGCQLREN 270
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 120/327 (36%), Gaps = 61/327 (18%)
Query: 9 RPRRDHDGGSKNQKRRVNNKDERGDDELIVYRILCPDEAXXXXXXXXXXXXNSIRQETRA 68
R R D D G+ + K +G D +++RI+ P + IR+ TRA
Sbjct: 74 RRRDDEDLGTASSAELSAAKRAKGQD--VIFRIVVPSKQIGKVIGKEGCRIQKIREMTRA 131
Query: 69 KVQVVDPFPGATYRVITIYCYXXXXXXXXXXXXLNNKRTLCAAQDALLKVHSAISNAKET 128
+++ D RVI I +N + A+ AL ++ + I +
Sbjct: 132 NIKIADAIARHEERVIII-------------SSKDNDEMVTDAEKALEQIANLILKEDNS 178
Query: 129 VRDSXXXXX---XXXXCQILVPSSQSANIIGKAGATIKRLRVKTRTNIKVIPKDAADPAH 185
D+ ++L+ SQ+ +IG +G I++LR + I V+ P
Sbjct: 179 SFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKLRNSSGAMITVLAPSQL-PLC 237
Query: 186 SCAMEFDNFVLITGESEAVKRALFAVSTIMYKFSPKEDIPLDTTXXXXXXXXXXXXXXXM 245
+ A E D V ++G+ V +AL + + + P++ I + T
Sbjct: 238 ASAHESDRVVQLSGDVSTVMKALEEIGCQLRENPPRQVISISPT---------------- 281
Query: 246 YPSGGLYPATNVHDLQGYSDAGGNTPSLYSSSFPIVSSLGASQSEELIVRMVCPSYKIGR 305
Y + P+ P L +S V+ M+ +G
Sbjct: 282 YNYAAIRPS---------------QPYLDPNSVDYVT-----------FEMLISETMVGG 315
Query: 306 VIGKGGGTIKSVRQASGARIEVDDSKA 332
+IG+ G I +R SGA I+V K
Sbjct: 316 LIGRCGSNISRIRNESGAMIKVYGGKG 342
>Medtr7g080630.2 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707393 | 20130731
Length = 379
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 98/190 (51%), Gaps = 16/190 (8%)
Query: 273 LYSSSFPIVSSLGASQSEELIVRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDSKA 332
L ++S +S+ ++ +++I R+V PS +IG+VIGK G I+ +R+ + A I++ D+ A
Sbjct: 81 LGTASSAELSAAKRAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIA 140
Query: 333 YDECLITITSTESSSDLKSIAVEAVLLLQEKINDEDDTTV-------------SIRLLVP 379
E + I S++ + ++ + A +A+ + I ED+++ +IRLL+
Sbjct: 141 RHEERVIIISSKDNDEMVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIA 200
Query: 380 SKVXXXXXXXXXXXXNEIRKRTRADVQI-SRNDKPKCGDVN--DELIEVVGEVDSVRDAL 436
++R + A + + + + P C + D ++++ G+V +V AL
Sbjct: 201 GSQAGGLIGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKAL 260
Query: 437 IQIVLRLRED 446
+I +LRE+
Sbjct: 261 EEIGCQLREN 270
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 120/327 (36%), Gaps = 61/327 (18%)
Query: 9 RPRRDHDGGSKNQKRRVNNKDERGDDELIVYRILCPDEAXXXXXXXXXXXXNSIRQETRA 68
R R D D G+ + K +G D +++RI+ P + IR+ TRA
Sbjct: 74 RRRDDEDLGTASSAELSAAKRAKGQD--VIFRIVVPSKQIGKVIGKEGCRIQKIREMTRA 131
Query: 69 KVQVVDPFPGATYRVITIYCYXXXXXXXXXXXXLNNKRTLCAAQDALLKVHSAISNAKET 128
+++ D RVI I +N + A+ AL ++ + I +
Sbjct: 132 NIKIADAIARHEERVIII-------------SSKDNDEMVTDAEKALEQIANLILKEDNS 178
Query: 129 VRDSXXXXX---XXXXCQILVPSSQSANIIGKAGATIKRLRVKTRTNIKVIPKDAADPAH 185
D+ ++L+ SQ+ +IG +G I++LR + I V+ P
Sbjct: 179 SFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKLRNSSGAMITVLAPSQL-PLC 237
Query: 186 SCAMEFDNFVLITGESEAVKRALFAVSTIMYKFSPKEDIPLDTTXXXXXXXXXXXXXXXM 245
+ A E D V ++G+ V +AL + + + P++ I + T
Sbjct: 238 ASAHESDRVVQLSGDVSTVMKALEEIGCQLRENPPRQVISISPT---------------- 281
Query: 246 YPSGGLYPATNVHDLQGYSDAGGNTPSLYSSSFPIVSSLGASQSEELIVRMVCPSYKIGR 305
Y + P+ P L +S V+ M+ +G
Sbjct: 282 YNYAAIRPS---------------QPYLDPNSVDYVT-----------FEMLISETMVGG 315
Query: 306 VIGKGGGTIKSVRQASGARIEVDDSKA 332
+IG+ G I +R SGA I+V K
Sbjct: 316 LIGRCGSNISRIRNESGAMIKVYGGKG 342
>Medtr7g080630.3 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 312
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 94/182 (51%), Gaps = 16/182 (8%)
Query: 281 VSSLGASQSEELIVRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDSKAYDECLITI 340
+S+ ++ +++I R+V PS +IG+VIGK G I+ +R+ + A I++ D+ A E + I
Sbjct: 89 LSAAKRAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVII 148
Query: 341 TSTESSSDLKSIAVEAVLLLQEKINDEDDTTV-------------SIRLLVPSKVXXXXX 387
S++ + ++ + A +A+ + I ED+++ +IRLL+
Sbjct: 149 ISSKDNDEMVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLI 208
Query: 388 XXXXXXXNEIRKRTRADVQI-SRNDKPKCGDVN--DELIEVVGEVDSVRDALIQIVLRLR 444
++R + A + + + + P C + D ++++ G+V +V AL +I +LR
Sbjct: 209 GMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLR 268
Query: 445 ED 446
E+
Sbjct: 269 EN 270
>Medtr7g115340.2 | poly(rC)-binding-like protein | HC |
chr7:47649475-47656173 | 20130731
Length = 442
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 19/181 (10%)
Query: 38 VYRILCPDEAXXXXXXXXXXXXNSIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXXX 97
V+R+L P + I +ETRA+V+++D PG + R + +
Sbjct: 48 VFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVSAKD------- 100
Query: 98 XXXXLNNKRTLCAAQDALLKVHSAISNAKETVRDSXXXXXXXXXCQILVPSSQSANIIGK 157
+L A D LLK H + + D+ + LVP+SQ+ ++IGK
Sbjct: 101 -----EPGSSLPPAVDGLLKAHKRLIDG----LDAPSGLAGKVSTKFLVPASQAGSLIGK 151
Query: 158 AGATIKRLRVKTRTNIKVIPKDAADPAHSCAMEFDNFVLITGESEAVKRALFAVSTIMYK 217
G T+K ++ + ++V+ A+ A++ D V + G+ V +A+ +++ + K
Sbjct: 152 QGGTVKSIQEASNCIVRVL---GAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKK 208
Query: 218 F 218
F
Sbjct: 209 F 209
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%)
Query: 539 TLEMLVPANAVSKVLGKGGTNIANIRKISGATVEISDSKSGRGDRIALISGTPEQKRAAE 598
T +M +P + V+G GTNI+ IR+ SGATV I +++ G+ ISGT Q + A+
Sbjct: 322 TQQMQIPLSYADAVIGTAGTNISYIRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQ 381
Query: 599 NLIQAFI 605
LIQ F+
Sbjct: 382 QLIQNFM 388
>Medtr7g115340.1 | poly(rC)-binding-like protein | HC |
chr7:47649189-47656173 | 20130731
Length = 510
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 19/181 (10%)
Query: 38 VYRILCPDEAXXXXXXXXXXXXNSIRQETRAKVQVVDPFPGATYRVITIYCYXXXXXXXX 97
V+R+L P + I +ETRA+V+++D PG + R + +
Sbjct: 116 VFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVSAKD------- 168
Query: 98 XXXXLNNKRTLCAAQDALLKVHSAISNAKETVRDSXXXXXXXXXCQILVPSSQSANIIGK 157
+L A D LLK H + + D+ + LVP+SQ+ ++IGK
Sbjct: 169 -----EPGSSLPPAVDGLLKAHKRLIDG----LDAPSGLAGKVSTKFLVPASQAGSLIGK 219
Query: 158 AGATIKRLRVKTRTNIKVIPKDAADPAHSCAMEFDNFVLITGESEAVKRALFAVSTIMYK 217
G T+K ++ + ++V+ A+ A++ D V + G+ V +A+ +++ + K
Sbjct: 220 QGGTVKSIQEASNCIVRVL---GAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKK 276
Query: 218 F 218
F
Sbjct: 277 F 277
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%)
Query: 539 TLEMLVPANAVSKVLGKGGTNIANIRKISGATVEISDSKSGRGDRIALISGTPEQKRAAE 598
T +M +P + V+G GTNI+ IR+ SGATV I +++ G+ ISGT Q + A+
Sbjct: 390 TQQMQIPLSYADAVIGTAGTNISYIRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQ 449
Query: 599 NLIQAFI 605
LIQ F+
Sbjct: 450 QLIQNFM 456
>Medtr4g127380.1 | poly(rC)-binding-like protein | HC |
chr4:52864244-52858917 | 20130731
Length = 431
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 144/359 (40%), Gaps = 94/359 (26%)
Query: 64 QETRAKVQVVDPFPGATYRVITIYCYXXXXXXXXXXXXLNNKRTLCAAQDALLKVHSAIS 123
+ET A+++V+D G R++ I + + L A DA+L++ +S
Sbjct: 71 EETHARIRVLDAPVGTPDRIVLI------------SGKEDLEAPLSPAMDAILRIFKRVS 118
Query: 124 NAKETVRDSXXXXXXXXXCQI--LVPSSQSANIIGKAGATIKRLRVKTRTNIKVIPKDAA 181
ET ++ C I LV S+Q+ N+IGK G++IK ++ T I+V+ D
Sbjct: 119 GLSET-DNNNTAAAGVALCSIRLLVASTQAINLIGKQGSSIKAIQENTGAVIRVLSGDEL 177
Query: 182 DPAHSCAMEFDNFVLITGESEAVKRALFAVSTIMYKFSPKED-IPLDTTXXXXXXXXXXX 240
P+++ A E + + GE+ V +AL AV + KF IPL
Sbjct: 178 -PSYAGADE--RIIDLQGETLKVLKALEAVVGHLRKFLVDSSVIPLFEKTCN-------- 226
Query: 241 XXXXMYPSGGLYPATNVHDLQGYSDAGGNTPSLYSSSFP-IVSSL--------------- 284
AT D Q +DA + PSLYS+S P IV+ +
Sbjct: 227 -------------ATISQDRQ--TDAWADKPSLYSASQPSIVADIPTKRDSFFADRESQL 271
Query: 285 ------------------------------GASQSEELIVRMVCPSYKIGRVIGKGGGTI 314
AS +I M P +IG G I
Sbjct: 272 DSLLSSSTMSLYGQDSSSISGLRSSAFNRASASIVTTVIQTMQIPLSYAEDIIGIQGTNI 331
Query: 315 KSVRQASGARIEVDDSKAYDECLITITSTESSSDLKSIAVEAVLLLQEKINDEDDTTVS 373
+R+ SGA + V +S+ DE ++ I T S+ +++ A L+QE I + ++T S
Sbjct: 332 DYIRRTSGAILTVQESRVPDEIIVEIKGT--STQVQT----AQQLIQEVITNHNETIAS 384
>Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 9/160 (5%)
Query: 294 VRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDSKAYDECL---ITITSTESSSDLK 350
VR + + G VIGKGG TI + SGARI++ + + I + S + L+
Sbjct: 38 VRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGAINEVLR 97
Query: 351 SIAVEAVLLLQEKINDEDDTTVS----IRLLVPSKVXXXXXXXXXXXXNEIRKRTRADVQ 406
++ + LL E ++ EDD V +RL+VP+ + ++A ++
Sbjct: 98 AVELILSKLLSE-LHSEDDNDVEPKTKVRLIVPNGSCGGIIGKGGATIRSFIEESQAGIK 156
Query: 407 ISRNDKPKCGDVNDELIEVVGEVDSVRDALIQIVLRLRED 446
IS D G ND ++ V G +D + IV +L ED
Sbjct: 157 ISPQDNSYYGQ-NDRIVTVTGTLDEQMRGIDLIVSKLAED 195
>Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 9/160 (5%)
Query: 294 VRMVCPSYKIGRVIGKGGGTIKSVRQASGARIEVDDSKAYDECL---ITITSTESSSDLK 350
VR + + G VIGKGG TI + SGARI++ + + I + S + L+
Sbjct: 38 VRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGAINEVLR 97
Query: 351 SIAVEAVLLLQEKINDEDDTTVS----IRLLVPSKVXXXXXXXXXXXXNEIRKRTRADVQ 406
++ + LL E ++ EDD V +RL+VP+ + ++A ++
Sbjct: 98 AVELILSKLLSE-LHSEDDNDVEPKTKVRLIVPNGSCGGIIGKGGATIRSFIEESQAGIK 156
Query: 407 ISRNDKPKCGDVNDELIEVVGEVDSVRDALIQIVLRLRED 446
IS D G ND ++ V G +D + IV +L ED
Sbjct: 157 ISPQDNSYYGQ-NDRIVTVTGTLDEQMRGIDLIVSKLAED 195
>Medtr5g049770.1 | RNA-binding KH domain protein | HC |
chr5:21769759-21766560 | 20130731
Length = 241
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 538 STLEMLVPANAVSKVLGKGGTNIANIRKISGATVEISD-SKSGRGDRIALISGTPEQKRA 596
+T+E++V + V G+ G N+ IR+ISGA V + D S +G +ISGTP+Q A
Sbjct: 173 TTVEIIVSEHVFGSVYGEDGGNLDRIRQISGADVTVFDPSSTGTSGGKVVISGTPDQTFA 232
Query: 597 AENLIQA 603
A++L+QA
Sbjct: 233 AQSLLQA 239