Miyakogusa Predicted Gene

Lj6g3v1946380.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1946380.1 Non Characterized Hit- tr|D8QXH8|D8QXH8_SELML
Putative uncharacterized protein OS=Selaginella
moelle,52.81,3e-19,SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL;
LSM,Ribonucleoprotein LSM domain; no description,NUL,CUFF.60256.1
         (111 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g019100.1 | small nuclear ribonucleoprotein | HC | chr2:61...   165   1e-41

>Medtr2g019100.1 | small nuclear ribonucleoprotein | HC |
           chr2:6167136-6169763 | 20130731
          Length = 113

 Score =  165 bits (417), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/113 (72%), Positives = 89/113 (78%), Gaps = 2/113 (1%)

Query: 1   MEQEAEQPIPVQVGTXXXXXXXXXXXXXXX--XXMLVGIKDGRFFLGGFYCIDKQGNIIL 58
           MEQEAEQP+PVQ G+                   MLVGIKDGRFFLG FYC+DKQGNIIL
Sbjct: 1   MEQEAEQPVPVQGGSSDSLESDRVSRVRKLLFRQMLVGIKDGRFFLGNFYCMDKQGNIIL 60

Query: 59  QDAVEYRSTRRSSPSPMEQRCLGLILIPSSCRATCHVDCSIDEQLSLLSLRET 111
           QD VEYRSTRRSSPSPMEQRC+GLILIPSSCR +CHVDCS+DEQLSLLSL +T
Sbjct: 61  QDTVEYRSTRRSSPSPMEQRCIGLILIPSSCRMSCHVDCSVDEQLSLLSLYKT 113