Miyakogusa Predicted Gene

Lj6g3v1932840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1932840.1 Non Characterized Hit- tr|A2Y7H8|A2Y7H8_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,61.18,3e-19,seg,NULL; 60S RIBOSOMAL PROTEIN L18A-RELATED,NULL;
60S RIBOSOMAL PROTEIN L18A,Ribosomal protein
L18a,NODE_41726_length_683_cov_7.893118.path1.1
         (152 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g072210.1 | transmembrane protein, putative | HC | chr2:30...    62   2e-10
Medtr2g072210.2 | transmembrane protein, putative | HC | chr2:30...    57   7e-09

>Medtr2g072210.1 | transmembrane protein, putative | HC |
           chr2:30355770-30361583 | 20130731
          Length = 163

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 34/62 (54%)

Query: 64  HALPVYAVAEGRPVRERRXXXXXXXXXXXXXXXXXXXXXXPWYIGAFLLLCVQMDYREKP 123
            A P YAVAEGRPVRERR                      PWY+GA ++LC ++DYREKP
Sbjct: 77  QAFPGYAVAEGRPVRERRLGCCGIGCGWCLFIMGFFLAAIPWYVGAIIMLCSRVDYREKP 136

Query: 124 GL 125
           G 
Sbjct: 137 GF 138


>Medtr2g072210.2 | transmembrane protein, putative | HC |
           chr2:30355780-30361636 | 20130731
          Length = 160

 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 32/62 (51%)

Query: 64  HALPVYAVAEGRPVRERRXXXXXXXXXXXXXXXXXXXXXXPWYIGAFLLLCVQMDYREKP 123
           H    + VAEGRPVRERR                      PWY+GA ++LC ++DYREKP
Sbjct: 74  HGYQAFPVAEGRPVRERRLGCCGIGCGWCLFIMGFFLAAIPWYVGAIIMLCSRVDYREKP 133

Query: 124 GL 125
           G 
Sbjct: 134 GF 135