Miyakogusa Predicted Gene

Lj6g3v1918200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1918200.1 tr|G7LE23|G7LE23_MEDTR 30S ribosomal protein S5
OS=Medicago truncatula GN=MTR_8g093680 PE=3 SV=1,78.93,0,seg,NULL; 30S
RIBOSOMAL PROTEIN S5,NULL; RIBOSOMAL S SUBUNIT,Ribosomal protein S5;
Ribosomal protein,CUFF.60181.1
         (500 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g093680.1 | 30S ribosomal protein S5 | HC | chr8:39195970-...   669   0.0  
Medtr8g093680.2 | 30S ribosomal protein S5 | HC | chr8:39195970-...   456   e-128
Medtr4g088615.1 | ribosomal protein S5 | HC | chr4:35234781-3523...    79   9e-15

>Medtr8g093680.1 | 30S ribosomal protein S5 | HC |
           chr8:39195970-39190835 | 20130731
          Length = 502

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/503 (67%), Positives = 377/503 (74%), Gaps = 4/503 (0%)

Query: 1   MGYLRYGGQTFRQILRCKSAGNVVRNSVRSQLGCEGAALSWYYSPFARKTLYSTSSDARI 60
           MGY++YG  +F +ILR  SA NV RNSVRS LG     L    S F  K+LYST+SDAR+
Sbjct: 1   MGYIQYGRHSFTKILRSASATNVFRNSVRSPLGYAATTLP-SCSHFHGKSLYSTASDARV 59

Query: 61  VQDLLAQVEKDRLREKNERMRAGLDTADIDAECEE--DYMGVGPLIXXXXXXXXXXCPEL 118
           V +LL +VEKDRLREKNER+RAGLDTADIDAE E+  DYMGV  LI            EL
Sbjct: 60  VMELLKEVEKDRLREKNERLRAGLDTADIDAETEDGYDYMGVSSLIEKLEKEKLKETSEL 119

Query: 119 MRXXX-XXXXXXXXXXXXXXQXXXXXXXXXXXXHQDLLKNFTDADTLDDAFKWMNRIDKF 177
            R                  Q            H+++++NFT+ADTLDDA+KWM +IDKF
Sbjct: 120 NRYEEPTDSDSDDEEDLDANQKKVDDFERKFRRHEEMIQNFTEADTLDDAYKWMQKIDKF 179

Query: 178 ENKHFRLRPEYRVIGELINRLKVVTDQKDKFILQNKLNRALRLVQWKEAFDPDNPDNYGV 237
           E+KHF+LR EYRVIGEL+NRLKVVT+QKD+FILQ+KLNRAL LVQWKEA+DPDNP NYG+
Sbjct: 180 EDKHFKLRTEYRVIGELMNRLKVVTEQKDRFILQHKLNRALILVQWKEAYDPDNPANYGL 239

Query: 238 IQHEQLGPTADALQHAGFEKEKQTIXXXXXXXXXXXXXXXXXXXXXXNIILAKLDAIDXX 297
           IQ EQ G   D L+ +GFEKE +                        NI+LAKLD ID  
Sbjct: 240 IQQEQGGANMDTLEQSGFEKEDKPAQGDEDAADNDDEVEFDDMKEKDNILLAKLDVIDKR 299

Query: 298 XXXXXXXXXYTFGKKGKVLEEEIRDLAEERNELTEKKRRPLYRKGFDVKLINVNRTCKVT 357
                    YTFG+KGK LEEEI+DLAEERNELTEKKRRPL+RKGFDVKLI+VNRTCKVT
Sbjct: 300 LEEKLAELEYTFGRKGKALEEEIKDLAEERNELTEKKRRPLFRKGFDVKLIDVNRTCKVT 359

Query: 358 KGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQNLHFVERHEEHTIAHA 417
           KGGQ+ KYTAMLACGNYNGVVGFAKAKGP  P AL KAYEKCFQNLH++ERHEEHTIAHA
Sbjct: 360 KGGQIFKYTAMLACGNYNGVVGFAKAKGPKAPDALSKAYEKCFQNLHYIERHEEHTIAHA 419

Query: 418 IQTSYKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSKVVGSRNPHNTVKAVFKAL 477
           IQTSYKKTKVYLWPA TATGMKAGRIVQTILHLAGFKNVKSKVVG RNPHNTVKAVFKAL
Sbjct: 420 IQTSYKKTKVYLWPASTATGMKAGRIVQTILHLAGFKNVKSKVVGQRNPHNTVKAVFKAL 479

Query: 478 NAIETPRDVQEKFGRTVVEKYLL 500
           NAIETP+DVQEKFGRTVVEKYLL
Sbjct: 480 NAIETPKDVQEKFGRTVVEKYLL 502


>Medtr8g093680.2 | 30S ribosomal protein S5 | HC |
           chr8:39195970-39192623 | 20130731
          Length = 413

 Score =  456 bits (1173), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/406 (58%), Positives = 276/406 (67%), Gaps = 4/406 (0%)

Query: 1   MGYLRYGGQTFRQILRCKSAGNVVRNSVRSQLGCEGAALSWYYSPFARKTLYSTSSDARI 60
           MGY++YG  +F +ILR  SA NV RNSVRS LG     L    S F  K+LYST+SDAR+
Sbjct: 1   MGYIQYGRHSFTKILRSASATNVFRNSVRSPLGYAATTLP-SCSHFHGKSLYSTASDARV 59

Query: 61  VQDLLAQVEKDRLREKNERMRAGLDTADIDAECEE--DYMGVGPLIXXXXXXXXXXCPEL 118
           V +LL +VEKDRLREKNER+RAGLDTADIDAE E+  DYMGV  LI            EL
Sbjct: 60  VMELLKEVEKDRLREKNERLRAGLDTADIDAETEDGYDYMGVSSLIEKLEKEKLKETSEL 119

Query: 119 MRXXX-XXXXXXXXXXXXXXQXXXXXXXXXXXXHQDLLKNFTDADTLDDAFKWMNRIDKF 177
            R                  Q            H+++++NFT+ADTLDDA+KWM +IDKF
Sbjct: 120 NRYEEPTDSDSDDEEDLDANQKKVDDFERKFRRHEEMIQNFTEADTLDDAYKWMQKIDKF 179

Query: 178 ENKHFRLRPEYRVIGELINRLKVVTDQKDKFILQNKLNRALRLVQWKEAFDPDNPDNYGV 237
           E+KHF+LR EYRVIGEL+NRLKVVT+QKD+FILQ+KLNRAL LVQWKEA+DPDNP NYG+
Sbjct: 180 EDKHFKLRTEYRVIGELMNRLKVVTEQKDRFILQHKLNRALILVQWKEAYDPDNPANYGL 239

Query: 238 IQHEQLGPTADALQHAGFEKEKQTIXXXXXXXXXXXXXXXXXXXXXXNIILAKLDAIDXX 297
           IQ EQ G   D L+ +GFEKE +                        NI+LAKLD ID  
Sbjct: 240 IQQEQGGANMDTLEQSGFEKEDKPAQGDEDAADNDDEVEFDDMKEKDNILLAKLDVIDKR 299

Query: 298 XXXXXXXXXYTFGKKGKVLEEEIRDLAEERNELTEKKRRPLYRKGFDVKLINVNRTCKVT 357
                    YTFG+KGK LEEEI+DLAEERNELTEKKRRPL+RKGFDVKLI+VNRTCKVT
Sbjct: 300 LEEKLAELEYTFGRKGKALEEEIKDLAEERNELTEKKRRPLFRKGFDVKLIDVNRTCKVT 359

Query: 358 KGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKCFQNL 403
           KGGQ+ KYTAMLACGNYNGVVGFAKAKGP  P AL K     +Q L
Sbjct: 360 KGGQIFKYTAMLACGNYNGVVGFAKAKGPKAPDALSKVPAISYQVL 405


>Medtr4g088615.1 | ribosomal protein S5 | HC |
           chr4:35234781-35236988 | 20130731
          Length = 303

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%)

Query: 340 RKGFDVKLINVNRTCKVTKGGQVVKYTAMLACGNYNGVVGFAKAKGPAVPVALQKAYEKC 399
           R G + ++I V R  KV KGG+ +++ A++  G+  G VG    K   V  A+QK+    
Sbjct: 144 RDGLEERVIQVRRVTKVVKGGKQMRFRAIVVVGDKQGRVGVGVGKAKEVVSAVQKSAINA 203

Query: 400 FQNLHFVERHEEHTIAHAIQTSYKKTKVYLWPAPTATGMKAGRIVQTILHLAGFKNVKSK 459
            +NL  V   +  T  H     Y  +KV L PA   TG+ AG  V+ +L +AG +N   K
Sbjct: 204 RRNLIRVPMTKYLTFPHRADGDYGASKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGK 263

Query: 460 VVGSRNPHNTVKAVFKALNAIETPRDVQEKFG 491
            +GS N  N  +A   A+  ++   +V E+ G
Sbjct: 264 QLGSDNALNNARATIAAVQKMKQYSEVAEERG 295