Miyakogusa Predicted Gene

Lj6g3v1915870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1915870.1 Non Characterized Hit- tr|Q9FGU0|Q9FGU0_ARATH
Putative uncharacterized protein OS=Arabidopsis
thalia,34.24,6e-18,FIP1-LIKE 1 PROTEIN,NULL; seg,NULL; Fip1,Pre-mRNA
polyadenylation factor Fip1,CUFF.60150.1
         (1038 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g122070.1 | Fip1 motif protein | HC | chr4:50411541-504042...   619   e-177
Medtr4g102690.1 | hypothetical protein | LC | chr4:42567744-4256...   111   3e-24
Medtr2g450210.2 | Fip1 [V]-like protein | HC | chr2:22147861-221...    94   9e-19
Medtr2g450210.1 | Fip1 [V]-like protein | HC | chr2:22147861-221...    93   1e-18

>Medtr4g122070.1 | Fip1 motif protein | HC | chr4:50411541-50404201 |
            20130731
          Length = 1110

 Score =  619 bits (1597), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 436/1027 (42%), Positives = 584/1027 (56%), Gaps = 125/1027 (12%)

Query: 88   LRTQGQGGSLFANNQM--------KKSNPSSMAMPSSFNNMTSSHLYAAAPNPMVSHQGG 139
            ++TQG   S+F NN M        K  +  +     SF N  S+  Y A           
Sbjct: 132  MKTQG---SMFVNNMMANKSTLLTKDCSSFTQGRGDSFQNHKSTSSYFAGS--------- 179

Query: 140  YSWFLPSYWSAFNVNVDALKEKPWVFSGVHKTDYFNYGFDETTWKLYCTSLEQHWRTSTQ 199
               FLP +W  ++VN+D  +EKPW   G   TDYFN+G +E TWK YC+SL         
Sbjct: 180  ---FLPWHWKIYDVNIDKFEEKPWRIPGADITDYFNFGLNENTWKQYCSSL--------- 227

Query: 200  QEQHWRASTQQEQHWRASTQTGISVDGSAKLNKPKGKAIRVEESMGERQPSIHLRRPVSR 259
                  ASTQ++     S   G  +  S+K   P G+AI+V +S+ +RQPS+ +RRP S 
Sbjct: 228  ------ASTQEQFDQPVS---GSLLSHSSKCEVPMGRAIQVGDSVVDRQPSVDVRRPRSI 278

Query: 260  DSDVVIEIKVLESSDDHSGSGNSTVVDASLEVESIVGKNKNILNYFTECDDVLSEDQLED 319
            DSDV+I+I V  SSD++SGS    V+D+S E E I G N++  N  +E  DVLS  QLED
Sbjct: 279  DSDVIIQINVHGSSDNNSGSVKCNVLDSSEERELISGVNRSKSNSSSE-HDVLSNKQLED 337

Query: 320  VKKSDEISLQERTSLIPGVNEDGHQDQADHLAEDTAEVSGKEIKAEENGGMDACSPYSCW 379
             K+S+  S QER  LIP V +  + D+ D  +ED  +V  +EIK E    +D CS    W
Sbjct: 338  AKQSELSSGQERNDLIPDVVKIQNPDEEDRYSED-GKVLEEEIKTEGRVCIDTCSEDPGW 396

Query: 380  NEPELSLGDHEHSLTSYTDSDSEGTQNSVHVDDEKSLVPERRQSINSITDLKGKSLPLYC 439
            +EPELSLGD E SLTSY+D+DSEGT++S+HV +E++  P R   ++S   LK +SLPLY 
Sbjct: 397  SEPELSLGDQELSLTSYSDNDSEGTEDSLHVYNERNHSPLRSHLVSSDIGLK-ESLPLYE 455

Query: 440  ENSKNNSFSRKAVNVAYNSRTRVPHRKEWRHRSGRHEGGLNLNKHNENDNHVSSILMSGA 499
            + SKN S +RK VN +Y SR +   +++ RH+SGRH  G  L KH ENDN+VS I  S  
Sbjct: 456  KTSKNISVNRKPVNTSYYSRNKGSVQQDQRHQSGRHMPGSKLQKHTENDNNVSHIPRSSG 515

Query: 500  RDLSQLGSQFVDYGSRHREQLQGFGSHKRRDVSYTRETKQTCYYGGEKAVDDLVQRDHSK 559
            R+LS    QFV   +R  E+LQ FGS +R+D+ Y  ETKQ+CYYG ++ VDDL Q  +S+
Sbjct: 516  RNLSPRCHQFV--KNRSDERLQYFGSRERKDLPYDWETKQSCYYGTDRNVDDLDQAVYSE 573

Query: 560  YSYEEG--RVRDKTNRYYRKNWGVRNYFSKPGSRMARYEDRERDHYHDGWGYAA------ 611
            YS  E   R R+  N+Y RK+   R YF +  + +   ED       D W  A+      
Sbjct: 574  YSDRENEDRFREDRNQYIRKSGDKREYFFERRTLIKYNED-------DDWDPASRKLYLD 626

Query: 612  DDLNPDSCRESMLLLPKHSSFPHQERDTQRERINDKSYFRDRNYNDD--FDECEIEFSNK 669
            DDL+  S RES     +HSSFP ++R+ QR+ ++ + +F+DRN + D  FD+ E EF NK
Sbjct: 627  DDLSLLSYRESRQFHSRHSSFPAKDREAQRQIMHHRRHFKDRNCDSDQWFDD-EFEFLNK 685

Query: 670  SYRMSPYSAEIEMEYLNNKRDEQFLHTDRDWRGSVRRVKHRGEPPLVLDNLWSGKMDEKC 729
             YR     AE EME LNN+ +EQFL  DR       R +H     L +D  WSG+ +++ 
Sbjct: 686  IYRTPSSFAEREMESLNNRHEEQFLQIDRAQERYTGRGRHPDRVSLDVDTPWSGRTEDEF 745

Query: 730  QAYTHHQNSNFRYRRQS-THSVRNVCGARVKENFEYH-----------------THAAED 771
              Y H+QNS F+Y+RQS T S RN    R  ++F  H                 T AAED
Sbjct: 746  PKYAHNQNSYFKYQRQSYTDSARNYM-HRENDSFREHETHNHATNRGNDWQCGYTDAAED 804

Query: 772  EDFMLYPVEEYQCYRSSSKFQNCTEEE-LVFRH-----------------HETHAT--SL 811
            E     PV+E + Y    +  + T  + +V+ H                 HE HA   SL
Sbjct: 805  EGCTTSPVDECEFYPLPYEVSHWTNNDNIVWNHDDLHPEDDAIFYEEPPMHERHARHRSL 864

Query: 812  QDDMQIDDIKLRQHQLNMPRRNNNGF--KSSKVICRSNLRQAALRCRKSVDLVNGEGKSQ 869
               +Q +DIKL+QHQLN  RR  + F  +SSKV+ R +     LR +KS  L+N EGKS 
Sbjct: 865  HARVQRNDIKLQQHQLNFSRRGGDIFIKRSSKVMSRDHSHPTVLRYKKSGALINREGKS- 923

Query: 870  ARSSGIFCSGRLQFVDEGIAKKPRASVGLAESRKKAITFETSKYESNLENKKCLQNLQDK 929
            A+ S +  +  LQ VD GIA+K +A VG  +SRKKAI  + SK +   +NKK LQNL DK
Sbjct: 924  AKGSRLMRNDTLQNVDRGIAEKRKALVGFDDSRKKAIKLDVSKSQCVDQNKKLLQNLSDK 983

Query: 930  GHKESLDIEEGQVVPEELFTVSSVSRKDVSEGAAK--------SQHENNSDQFIGGYDNQ 981
            G KE LD+EEG++V EE     SVSR+DVSEGA          SQ+ NNS+  I   D+Q
Sbjct: 984  GQKEGLDVEEGEIVTEEPSVEVSVSRRDVSEGATLAENVKKKISQNGNNSEPQIDNLDSQ 1043

Query: 982  RILDSLAKMEKRGERFKQPITLKTEAEEEGLKLNND-----------SVDAGEAKQHRPA 1030
            +ILD+LAKMEKR ERFKQPI +  EA ++ + LNN+           +VD GE KQ RP 
Sbjct: 1044 KILDTLAKMEKRRERFKQPIGMNKEAVKQPISLNNEVVKSLKLNTNSAVDIGEMKQQRPV 1103

Query: 1031 RKRRWVG 1037
            RKRRW G
Sbjct: 1104 RKRRWNG 1110


>Medtr4g102690.1 | hypothetical protein | LC |
           chr4:42567744-42564581 | 20130731
          Length = 205

 Score =  111 bits (278), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 101/161 (62%), Gaps = 5/161 (3%)

Query: 331 RTSLIPGVNEDGHQDQADHLAEDTAEVSGKEIKAEENGGMDACSPYSCWNEPELSLGDHE 390
           R  LIP V +  + D+ D  +ED  +V  KEIK E     D CS    W+EPELSLGD E
Sbjct: 50  RNDLIPDVVKIQNPDEEDRYSED-GKVMEKEIKREGRVCTDTCSEDPGWSEPELSLGDQE 108

Query: 391 HSLTSYTDSDSEGTQNSVHVDDEKSLVPERRQSINSITDLKGKSLPLYCENSKNNSFSRK 450
            SLT Y ++DSEGTQ+S++V +E++    R   ++S T LK +SLPLY + SKN S +RK
Sbjct: 109 LSLTFYFNNDSEGTQDSLYVYNERNHSSLRSHLVSSDTGLK-ESLPLYEKTSKNISVNRK 167

Query: 451 AVNVAYNSRTRVPHRKEWRHRSGRHEGGLNLNKHNENDNHV 491
            VN +Y SR R P +++   ++GRH     L KH END++V
Sbjct: 168 PVNTSYYSRNRGPVQQD---QNGRHMTSSKLQKHTENDSNV 205


>Medtr2g450210.2 | Fip1 [V]-like protein | HC |
           chr2:22147861-22158767 | 20130731
          Length = 1152

 Score = 93.6 bits (231), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 28/171 (16%)

Query: 138 GGYSWFLPSYWSAFNVNVDALKEKPWVFSGVHKTDYFNYGFDETTWKLYCTSLEQHWRTS 197
           GG  + LPS+ + F+V++++ +EK W +  V  +D+FN+G +E TWK YC  LEQ    S
Sbjct: 333 GGLEFTLPSHKTIFDVDIESFEEKLWKYPNVDASDFFNFGLNEETWKDYCKQLEQLRLES 392

Query: 198 TQQEQHWRASTQQEQH-------WRASTQTGI-------------------SVDGSAKLN 231
           T Q +     + + +H          +  TG+                    + GS ++ 
Sbjct: 393 TMQSKIRVYESGRTEHDYDPDLPPELAAATGLHDGAVENANSVKSDVGQSDVMKGSGRMR 452

Query: 232 K--PKGKAIRVEESMGERQPSIHLRRPVSRDSDVVIEIKVLESSDDHSGSG 280
              P G+AI+VE   GER P+I  R P  RDSD +IEI +  + DD S  G
Sbjct: 453 PPMPTGRAIQVEGGYGERLPTIDTRPPRLRDSDAIIEIVLQGAEDDDSSVG 503


>Medtr2g450210.1 | Fip1 [V]-like protein | HC |
           chr2:22147861-22158767 | 20130731
          Length = 1328

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 28/171 (16%)

Query: 138 GGYSWFLPSYWSAFNVNVDALKEKPWVFSGVHKTDYFNYGFDETTWKLYCTSLEQHWRTS 197
           GG  + LPS+ + F+V++++ +EK W +  V  +D+FN+G +E TWK YC  LEQ    S
Sbjct: 333 GGLEFTLPSHKTIFDVDIESFEEKLWKYPNVDASDFFNFGLNEETWKDYCKQLEQLRLES 392

Query: 198 TQQEQHWRASTQQEQH-------WRASTQTGI-------------------SVDGSAKLN 231
           T Q +     + + +H          +  TG+                    + GS ++ 
Sbjct: 393 TMQSKIRVYESGRTEHDYDPDLPPELAAATGLHDGAVENANSVKSDVGQSDVMKGSGRMR 452

Query: 232 K--PKGKAIRVEESMGERQPSIHLRRPVSRDSDVVIEIKVLESSDDHSGSG 280
              P G+AI+VE   GER P+I  R P  RDSD +IEI +  + DD S  G
Sbjct: 453 PPMPTGRAIQVEGGYGERLPTIDTRPPRLRDSDAIIEIVLQGAEDDDSSVG 503