Miyakogusa Predicted Gene

Lj6g3v1898080.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1898080.1 Non Characterized Hit- tr|I1GZ12|I1GZ12_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,35.8,6e-18,coiled-coil,NULL,gene.g66888.t1.1
         (182 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g109960.1 | TMV-MP30 binding protein 2C, putative | HC | c...   199   1e-51

>Medtr4g109960.1 | TMV-MP30 binding protein 2C, putative | HC |
           chr4:45752766-45748808 | 20130731
          Length = 326

 Score =  199 bits (506), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/178 (59%), Positives = 124/178 (69%), Gaps = 20/178 (11%)

Query: 1   MSSVNEKLDELKHQAAQKDSLLKSTQQQLFDVKLLNGVESVSWKNARYRFPQMMLADNQA 60
           M+SVN KLDE+KHQ ++K+  LK  QQQL D K+                    LAD QA
Sbjct: 165 MNSVNAKLDEMKHQVSEKEYSLKYAQQQLSDAKI-------------------KLADKQA 205

Query: 61  ALEKIQWESMISNKKAEKLQEEIGSMQGDLSSFTLLLEGLTITDNAEYIDDYDIKPYVHS 120
           ALEKI WE M SNKK EKLQ E+ S+Q D+S+FTLLLE    TD A+Y DDYD KPYV  
Sbjct: 206 ALEKIHWEMMTSNKKVEKLQVELDSVQADVSTFTLLLESFAKTDTAKYTDDYDTKPYVF- 264

Query: 121 NHLPSIDDLDEMEMHKIEEARKAYNVAVAYAKEKQDQESIAAAANARLHLQSILFKPK 178
           NH+P IDD+DEME  KIEEARKAY  AVA   EK+D+ES+AA+ANARLHLQS+LFK K
Sbjct: 265 NHVPDIDDMDEMECQKIEEARKAYIAAVAVCDEKRDEESVAASANARLHLQSLLFKSK 322