Miyakogusa Predicted Gene
- Lj6g3v1880080.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1880080.2 tr|C7J964|C7J964_ORYSJ Os11g0572500 protein
OS=Oryza sativa subsp. japonica GN=Os11g0572500 PE=4
SV=,57.89,8e-18,seg,NULL; Ring finger,Zinc finger, RING-type;
OS04G0579200 PROTEIN,NULL; RING FINGER PROTEIN 11 (SID,CUFF.60042.2
(264 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g022680.2 | E3 ubiquitin-protein ligase RHF2A, putative | ... 274 5e-74
Medtr2g022680.1 | E3 ubiquitin-protein ligase RHF2A, putative | ... 274 8e-74
Medtr2g022680.3 | E3 ubiquitin-protein ligase RHF2A, putative | ... 258 4e-69
Medtr7g106770.1 | E3 ubiquitin-protein ligase RHF2A-like protein... 112 5e-25
Medtr2g087820.1 | E3 ubiquitin-protein ligase RHF2A-like protein... 109 3e-24
Medtr2g087820.2 | E3 ubiquitin-protein ligase RHF2A-like protein... 107 1e-23
Medtr8g030510.1 | anaphase-promoting complex subunit 11 RING-H2 ... 51 1e-06
Medtr8g030510.2 | anaphase-promoting complex subunit 11 RING-H2 ... 51 1e-06
Medtr8g098665.2 | anaphase-promoting complex subunit 11 RING-H2 ... 49 3e-06
Medtr8g098665.1 | anaphase-promoting complex subunit 11 RING-H2 ... 49 3e-06
>Medtr2g022680.2 | E3 ubiquitin-protein ligase RHF2A, putative | HC
| chr2:7872684-7868741 | 20130731
Length = 388
Score = 274 bits (701), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 149/246 (60%), Positives = 168/246 (68%), Gaps = 17/246 (6%)
Query: 28 FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEAEKRLRS 87
F+VHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSL+LKDPA QELL AVEAEK LRS
Sbjct: 45 FSVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLSLKDPACQELLDAVEAEKSLRS 104
Query: 88 RNVNSSSFANSRL-----NDGHDGSYSEECDFDEQIMQHLVAAASRARFVHRQERRXXXX 142
RN +S S ANSR+ N HD S S+E DFDE+IMQHL AAASRARFV RQ R+
Sbjct: 105 RNNHSPSLANSRVPFGYSNGDHDDS-SDEIDFDEEIMQHLYAAASRARFVQRQRRQGSSG 163
Query: 143 XXXXXXXXVH----VRREQPTPTTTSLSQGSSPTSGVPSNVNNQPPTPVVDEVARNTSPQ 198
+ V Q T TTS + GSSPT+ +PS N +P EVARNTSP+
Sbjct: 164 AGPSEILVFNSSGPVSGMQST-LTTSPAGGSSPTTDLPSTANARP------EVARNTSPE 216
Query: 199 TDVPFRARVIYSQTPPESARRLNTPEMFSFPEXXXXXXXXXXXXXXXXISKGTRGLKEKL 258
DVP+R RV+YS +PP+ R+LNT EMFSFPE ISK TRGLKEKL
Sbjct: 217 VDVPYRPRVLYSPSPPQDERKLNTSEMFSFPESFKSKFSAASARYKESISKSTRGLKEKL 276
Query: 259 LARNAS 264
LARN +
Sbjct: 277 LARNVT 282
>Medtr2g022680.1 | E3 ubiquitin-protein ligase RHF2A, putative | HC
| chr2:7872724-7868674 | 20130731
Length = 381
Score = 274 bits (700), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 149/246 (60%), Positives = 168/246 (68%), Gaps = 17/246 (6%)
Query: 28 FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEAEKRLRS 87
F+VHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSL+LKDPA QELL AVEAEK LRS
Sbjct: 45 FSVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLSLKDPACQELLDAVEAEKSLRS 104
Query: 88 RNVNSSSFANSRL-----NDGHDGSYSEECDFDEQIMQHLVAAASRARFVHRQERRXXXX 142
RN +S S ANSR+ N HD S S+E DFDE+IMQHL AAASRARFV RQ R+
Sbjct: 105 RNNHSPSLANSRVPFGYSNGDHDDS-SDEIDFDEEIMQHLYAAASRARFVQRQRRQGSSG 163
Query: 143 XXXXXXXXVH----VRREQPTPTTTSLSQGSSPTSGVPSNVNNQPPTPVVDEVARNTSPQ 198
+ V Q T TTS + GSSPT+ +PS N +P EVARNTSP+
Sbjct: 164 AGPSEILVFNSSGPVSGMQST-LTTSPAGGSSPTTDLPSTANARP------EVARNTSPE 216
Query: 199 TDVPFRARVIYSQTPPESARRLNTPEMFSFPEXXXXXXXXXXXXXXXXISKGTRGLKEKL 258
DVP+R RV+YS +PP+ R+LNT EMFSFPE ISK TRGLKEKL
Sbjct: 217 VDVPYRPRVLYSPSPPQDERKLNTSEMFSFPESFKSKFSAASARYKESISKSTRGLKEKL 276
Query: 259 LARNAS 264
LARN +
Sbjct: 277 LARNVT 282
>Medtr2g022680.3 | E3 ubiquitin-protein ligase RHF2A, putative | HC
| chr2:7872724-7868698 | 20130731
Length = 336
Score = 258 bits (659), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 142/238 (59%), Positives = 160/238 (67%), Gaps = 17/238 (7%)
Query: 36 VTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEAEKRLRSRNVNSSSF 95
VTCCKHEYHLHCILEWSQRSKECPICWQSL+LKDPA QELL AVEAEK LRSRN +S S
Sbjct: 8 VTCCKHEYHLHCILEWSQRSKECPICWQSLSLKDPACQELLDAVEAEKSLRSRNNHSPSL 67
Query: 96 ANSRL-----NDGHDGSYSEECDFDEQIMQHLVAAASRARFVHRQERRXXXXXXXXXXXX 150
ANSR+ N HD S S+E DFDE+IMQHL AAASRARFV RQ R+
Sbjct: 68 ANSRVPFGYSNGDHDDS-SDEIDFDEEIMQHLYAAASRARFVQRQRRQGSSGAGPSEILV 126
Query: 151 VH----VRREQPTPTTTSLSQGSSPTSGVPSNVNNQPPTPVVDEVARNTSPQTDVPFRAR 206
+ V Q T TTS + GSSPT+ +PS N +P EVARNTSP+ DVP+R R
Sbjct: 127 FNSSGPVSGMQST-LTTSPAGGSSPTTDLPSTANARP------EVARNTSPEVDVPYRPR 179
Query: 207 VIYSQTPPESARRLNTPEMFSFPEXXXXXXXXXXXXXXXXISKGTRGLKEKLLARNAS 264
V+YS +PP+ R+LNT EMFSFPE ISK TRGLKEKLLARN +
Sbjct: 180 VLYSPSPPQDERKLNTSEMFSFPESFKSKFSAASARYKESISKSTRGLKEKLLARNVT 237
>Medtr7g106770.1 | E3 ubiquitin-protein ligase RHF2A-like protein |
HC | chr7:43487788-43486082 | 20130731
Length = 290
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 118/262 (45%), Gaps = 48/262 (18%)
Query: 28 FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEAEKRLR- 86
F +DPST T C+HE+HL C+LEW QRS +CP+CWQ ++LKDP QEL AVE E++ R
Sbjct: 41 FCDNDPSTATACRHEFHLQCVLEWGQRSSQCPMCWQPISLKDPTGQELFEAVEQERKWRV 100
Query: 87 --SRNVNS------SSFANSRLNDGHDGSYSEECDFDEQIMQHLVAAASRARFVH----- 133
SRN++ F L+ G +GS +E+++Q+L AS R H
Sbjct: 101 TPSRNIDIFHSPTLGGFGFQHLHMGVNGS-----SLEERLLQNLAIVASIGRTHHVGRRE 155
Query: 134 RQERRXXXXXXXXXXXXVHVRREQPTPTTTS-----------LSQGSSPTSGVPSNVNNQ 182
Q+ R +H+ Q TP T+S ++GSS + + N+Q
Sbjct: 156 GQQIRPSGHEREDNLNAIHM-SSQSTPITSSEDEPLQQILKRQTEGSSTSRSTVTETNDQ 214
Query: 183 PPTPVVDEVARNTSPQTDVPFRARVIYSQTPPESARRLNTPEMFSFPEXXXXXXXXXXXX 242
+ N+SP + R + E SF +
Sbjct: 215 ETYSNDRDCVANSSPI-----------------NQNRERSSEFHSFSDTLRSKLNAVSMR 257
Query: 243 XXXXISKGTRGLKEKLLARNAS 264
IS GTRG KE+L +R+++
Sbjct: 258 YKESISNGTRGWKERLFSRSST 279
>Medtr2g087820.1 | E3 ubiquitin-protein ligase RHF2A-like protein |
HC | chr2:36962423-36958700 | 20130731
Length = 382
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 126/258 (48%), Gaps = 23/258 (8%)
Query: 28 FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEAEKRLR- 86
F DPSTVT CKHE+HL CILEW QRS +CP+CWQS++LKDP QELL AVE E+ +R
Sbjct: 44 FIDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQSISLKDPTGQELLEAVERERNIRF 103
Query: 87 SRNVNSSSFANSRLND---GHDGSYSEECDFDEQIMQHLVAAA--SRARFVHRQE----R 137
+ N++ F + L D H + + D +E+I+QH AAA RAR + R+E R
Sbjct: 104 NPTRNATIFHHPTLGDFELQHLPVGANDADLEERILQHFAAAAAMGRARHIARREGQRNR 163
Query: 138 RXXXXXXXXXXXXVHVRREQPTPTTTSLSQGS----SPTSG-VPSNVNNQPPTPVVDEVA 192
H P ++S Q +P +G P + PP D+V+
Sbjct: 164 SSAQGRPQYMVFSAHPNSPPMAPASSSPPQRGDGEQTPATGEEPPQLTLVPPV-QTDQVS 222
Query: 193 RNTSPQ----TD---VPFRARVIYSQTPPESARRLNTPEMFSFPEXXXXXXXXXXXXXXX 245
+ S TD + + +R +Q+ P S R E+ SF E
Sbjct: 223 ASGSGSAALATDNLGLSYNSRRSPNQSSPSSQDRAGPSELQSFSESLKSKLNAVSTRYKE 282
Query: 246 XISKGTRGLKEKLLARNA 263
ISK TRG KE+ +R +
Sbjct: 283 SISKSTRGWKERWFSRTS 300
>Medtr2g087820.2 | E3 ubiquitin-protein ligase RHF2A-like protein |
HC | chr2:36962365-36958768 | 20130731
Length = 383
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 76/115 (66%), Gaps = 6/115 (5%)
Query: 28 FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEAEKRLR- 86
F DPSTVT CKHE+HL CILEW QRS +CP+CWQS++LKDP QELL AVE E+ +R
Sbjct: 44 FIDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQSISLKDPTGQELLEAVERERNIRF 103
Query: 87 SRNVNSSSFANSRLND---GHDGSYSEECDFDEQIMQHLVAAA--SRARFVHRQE 136
+ N++ F + L D H + + D +E+I+QH AAA RAR + R+E
Sbjct: 104 NPTRNATIFHHPTLGDFELQHLPVGANDADLEERILQHFAAAAAMGRARHIARRE 158
>Medtr8g030510.1 | anaphase-promoting complex subunit 11 RING-H2
finger protein | HC | chr8:11202384-11208450 | 20130731
Length = 191
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 28 FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLAL 67
++V +P T++ C+H +HL CILEW +RS CPIC Q +
Sbjct: 147 YDVENPKTLSKCEHHFHLACILEWMERSDSCPICDQEMIF 186
>Medtr8g030510.2 | anaphase-promoting complex subunit 11 RING-H2
finger protein | HC | chr8:11202384-11208450 | 20130731
Length = 191
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 28 FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLAL 67
++V +P T++ C+H +HL CILEW +RS CPIC Q +
Sbjct: 147 YDVENPKTLSKCEHHFHLACILEWMERSDSCPICDQEMIF 186
>Medtr8g098665.2 | anaphase-promoting complex subunit 11 RING-H2
finger protein | HC | chr8:41188446-41185266 | 20130731
Length = 207
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 28 FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDP 70
++ +P T C H++HL CILEW +RS+ CP+C Q P
Sbjct: 163 YDAENPKLTTQCGHDFHLACILEWMERSETCPVCDQVTVFSTP 205
>Medtr8g098665.1 | anaphase-promoting complex subunit 11 RING-H2
finger protein | HC | chr8:41188349-41185397 | 20130731
Length = 207
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 28 FNVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDP 70
++ +P T C H++HL CILEW +RS+ CP+C Q P
Sbjct: 163 YDAENPKLTTQCGHDFHLACILEWMERSETCPVCDQVTVFSTP 205