Miyakogusa Predicted Gene

Lj6g3v1879930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1879930.1 Non Characterized Hit- tr|E1Z2G6|E1Z2G6_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,37.5,0.0000000002,SUBFAMILY NOT NAMED,NULL; RNA
PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN,NULL; Pseudouridine
synthase,P,NODE_71804_length_1314_cov_9.027397.path2.1
         (161 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g022770.3 | RNA pseudouridine synthase | HC | chr2:7928768...   304   2e-83
Medtr2g022770.1 | RNA pseudouridine synthase | HC | chr2:7928768...   304   2e-83
Medtr2g022770.2 | RNA pseudouridine synthase | HC | chr2:7928768...   304   2e-83
Medtr2g022770.4 | RNA pseudouridine synthase | HC | chr2:7928768...   304   2e-83
Medtr7g113450.1 | RNA pseudouridine synthase | HC | chr7:4673192...   274   3e-74

>Medtr2g022770.3 | RNA pseudouridine synthase | HC |
           chr2:7928768-7924511 | 20130731
          Length = 473

 Score =  304 bits (779), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 134/161 (83%), Positives = 151/161 (93%)

Query: 1   MRPVNTAPRLISEDFIKGWHRCQLEVLECRKVPWPTTVIQDKYCVEDCGWPSQDHAYECI 60
           MRP+N APRLISEDFIKGW  CQLEV+ECRK+PWPT+V+QD+YCVEDCGWPSQD+AYEC 
Sbjct: 313 MRPINMAPRLISEDFIKGWLLCQLEVIECRKIPWPTSVVQDEYCVEDCGWPSQDYAYECK 372

Query: 61  INLLTGKTHQIRAQFSACKAPLIGDSMYMPAAMAEISNPGLNPFGKYKKDFSIESEEEIA 120
           INLLTG+THQIRAQF+ACKAPL+GD+MYMPAA+AE+ NPGLNPFGKYKKDF  ESE+E A
Sbjct: 373 INLLTGRTHQIRAQFAACKAPLVGDTMYMPAAVAEMINPGLNPFGKYKKDFPSESEKEAA 432

Query: 121 VINWIAQHGKEPSVVIGLQACQISWDDKEHFYQAGSPWWRC 161
           VINW+AQHGKEPSV IGLQACQISWDD EHF++AGSPWWRC
Sbjct: 433 VINWVAQHGKEPSVAIGLQACQISWDDDEHFHRAGSPWWRC 473


>Medtr2g022770.1 | RNA pseudouridine synthase | HC |
           chr2:7928768-7924511 | 20130731
          Length = 473

 Score =  304 bits (779), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 134/161 (83%), Positives = 151/161 (93%)

Query: 1   MRPVNTAPRLISEDFIKGWHRCQLEVLECRKVPWPTTVIQDKYCVEDCGWPSQDHAYECI 60
           MRP+N APRLISEDFIKGW  CQLEV+ECRK+PWPT+V+QD+YCVEDCGWPSQD+AYEC 
Sbjct: 313 MRPINMAPRLISEDFIKGWLLCQLEVIECRKIPWPTSVVQDEYCVEDCGWPSQDYAYECK 372

Query: 61  INLLTGKTHQIRAQFSACKAPLIGDSMYMPAAMAEISNPGLNPFGKYKKDFSIESEEEIA 120
           INLLTG+THQIRAQF+ACKAPL+GD+MYMPAA+AE+ NPGLNPFGKYKKDF  ESE+E A
Sbjct: 373 INLLTGRTHQIRAQFAACKAPLVGDTMYMPAAVAEMINPGLNPFGKYKKDFPSESEKEAA 432

Query: 121 VINWIAQHGKEPSVVIGLQACQISWDDKEHFYQAGSPWWRC 161
           VINW+AQHGKEPSV IGLQACQISWDD EHF++AGSPWWRC
Sbjct: 433 VINWVAQHGKEPSVAIGLQACQISWDDDEHFHRAGSPWWRC 473


>Medtr2g022770.2 | RNA pseudouridine synthase | HC |
           chr2:7928768-7924511 | 20130731
          Length = 473

 Score =  304 bits (779), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 134/161 (83%), Positives = 151/161 (93%)

Query: 1   MRPVNTAPRLISEDFIKGWHRCQLEVLECRKVPWPTTVIQDKYCVEDCGWPSQDHAYECI 60
           MRP+N APRLISEDFIKGW  CQLEV+ECRK+PWPT+V+QD+YCVEDCGWPSQD+AYEC 
Sbjct: 313 MRPINMAPRLISEDFIKGWLLCQLEVIECRKIPWPTSVVQDEYCVEDCGWPSQDYAYECK 372

Query: 61  INLLTGKTHQIRAQFSACKAPLIGDSMYMPAAMAEISNPGLNPFGKYKKDFSIESEEEIA 120
           INLLTG+THQIRAQF+ACKAPL+GD+MYMPAA+AE+ NPGLNPFGKYKKDF  ESE+E A
Sbjct: 373 INLLTGRTHQIRAQFAACKAPLVGDTMYMPAAVAEMINPGLNPFGKYKKDFPSESEKEAA 432

Query: 121 VINWIAQHGKEPSVVIGLQACQISWDDKEHFYQAGSPWWRC 161
           VINW+AQHGKEPSV IGLQACQISWDD EHF++AGSPWWRC
Sbjct: 433 VINWVAQHGKEPSVAIGLQACQISWDDDEHFHRAGSPWWRC 473


>Medtr2g022770.4 | RNA pseudouridine synthase | HC |
           chr2:7928768-7924511 | 20130731
          Length = 473

 Score =  304 bits (779), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 134/161 (83%), Positives = 151/161 (93%)

Query: 1   MRPVNTAPRLISEDFIKGWHRCQLEVLECRKVPWPTTVIQDKYCVEDCGWPSQDHAYECI 60
           MRP+N APRLISEDFIKGW  CQLEV+ECRK+PWPT+V+QD+YCVEDCGWPSQD+AYEC 
Sbjct: 313 MRPINMAPRLISEDFIKGWLLCQLEVIECRKIPWPTSVVQDEYCVEDCGWPSQDYAYECK 372

Query: 61  INLLTGKTHQIRAQFSACKAPLIGDSMYMPAAMAEISNPGLNPFGKYKKDFSIESEEEIA 120
           INLLTG+THQIRAQF+ACKAPL+GD+MYMPAA+AE+ NPGLNPFGKYKKDF  ESE+E A
Sbjct: 373 INLLTGRTHQIRAQFAACKAPLVGDTMYMPAAVAEMINPGLNPFGKYKKDFPSESEKEAA 432

Query: 121 VINWIAQHGKEPSVVIGLQACQISWDDKEHFYQAGSPWWRC 161
           VINW+AQHGKEPSV IGLQACQISWDD EHF++AGSPWWRC
Sbjct: 433 VINWVAQHGKEPSVAIGLQACQISWDDDEHFHRAGSPWWRC 473


>Medtr7g113450.1 | RNA pseudouridine synthase | HC |
           chr7:46731924-46728028 | 20130731
          Length = 450

 Score =  274 bits (701), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 125/159 (78%), Positives = 141/159 (88%), Gaps = 4/159 (2%)

Query: 1   MRPVNTAPRLISEDFIKGWHRCQLEVLECRKVPWPTTVIQDKYCVEDCGWPSQDHAYECI 60
           MRP NTAPRLISED IKGWH CQLEV++CRK+PWP  V+QD+YC    GWPSQD+AYEC 
Sbjct: 293 MRPTNTAPRLISEDCIKGWHICQLEVMDCRKIPWPAIVVQDEYC----GWPSQDYAYECK 348

Query: 61  INLLTGKTHQIRAQFSACKAPLIGDSMYMPAAMAEISNPGLNPFGKYKKDFSIESEEEIA 120
           INLLTG+THQIRAQF+ACKAP+IGD+MYMPAA+AE+ NPGLNPFGKY KDFS ESE++ A
Sbjct: 349 INLLTGRTHQIRAQFAACKAPIIGDTMYMPAAIAEMINPGLNPFGKYNKDFSSESEKKTA 408

Query: 121 VINWIAQHGKEPSVVIGLQACQISWDDKEHFYQAGSPWW 159
           VINWIAQHGKEPSV IGLQACQISWDD E+ Y+AG PWW
Sbjct: 409 VINWIAQHGKEPSVAIGLQACQISWDDDEYIYRAGLPWW 447