Miyakogusa Predicted Gene

Lj6g3v1879920.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1879920.1 Non Characterized Hit- tr|E1Z2G6|E1Z2G6_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,33.5,2e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; RNA
PSEUDOURIDYLATE SYNTHASE FAMILY
PROTEIN,NULL,NODE_71802_length_816_cov_7.406863.path1.1
         (268 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g022770.3 | RNA pseudouridine synthase | HC | chr2:7928768...   386   e-107
Medtr2g022770.1 | RNA pseudouridine synthase | HC | chr2:7928768...   386   e-107
Medtr2g022770.2 | RNA pseudouridine synthase | HC | chr2:7928768...   386   e-107
Medtr2g022770.4 | RNA pseudouridine synthase | HC | chr2:7928768...   386   e-107
Medtr7g113450.2 | RNA pseudouridine synthase | HC | chr7:4673192...   369   e-102
Medtr7g113450.1 | RNA pseudouridine synthase | HC | chr7:4673192...   367   e-102

>Medtr2g022770.3 | RNA pseudouridine synthase | HC |
           chr2:7928768-7924511 | 20130731
          Length = 473

 Score =  386 bits (992), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/271 (72%), Positives = 218/271 (80%), Gaps = 6/271 (2%)

Query: 1   MASVAVASMFFAGDCRSFAVPPVSRALRNSLNKH----AFSWRCRSSHGSNPAITGESVT 56
           M SVAVASM FAG CR+ AVP  +RA+  SL KH    AF  RCRSSH S  AI GE+ +
Sbjct: 1   MCSVAVASMLFAGSCRTLAVPAAARAIPISLTKHLTNHAFRLRCRSSHNSFTAIAGETES 60

Query: 57  STIDDAGNLPXXXXXXXXYPKYDRLLPCPLHKSPPRIEHLVVSEGGPVLEYICKSLDLPP 116
           ST D A NL         YPKYDRLLPCP HKSPPRIEHLVV+E GPVLEYICK+L+LP 
Sbjct: 61  STTD-AVNL-TVTSSSNSYPKYDRLLPCPTHKSPPRIEHLVVTEEGPVLEYICKALNLPH 118

Query: 117 LFVADLIQFGAVYYALVXXXXXXSATPEQMRIFKQVTEPSVLQKRTSIKGKTVQAAQKTF 176
           LFVADLIQFGAVY+ALV      +AT EQ+R+FK+VTEP V++KR S+KGKT++ AQKTF
Sbjct: 119 LFVADLIQFGAVYFALVCPKPPPNATEEQIRVFKEVTEPLVVRKRASVKGKTIREAQKTF 178

Query: 177 RITHGDQFVEPGTYLRVHVHPKRFPRCYEIDWRSRVIAVAESYVVLDKPAGTSVGETRGN 236
           R+T  DQFVEPGTYLRVHVHPKRFPR YEIDWRSR+IAV ESYVVLDKPAGTSVG T  N
Sbjct: 179 RVTDVDQFVEPGTYLRVHVHPKRFPRSYEIDWRSRIIAVKESYVVLDKPAGTSVGGTTDN 238

Query: 237 IEESCVTFATRALGLTTPLLTTHQIDNCTEG 267
           IEESC TFATRALGLTTPL+TTHQIDNCTEG
Sbjct: 239 IEESCATFATRALGLTTPLMTTHQIDNCTEG 269


>Medtr2g022770.1 | RNA pseudouridine synthase | HC |
           chr2:7928768-7924511 | 20130731
          Length = 473

 Score =  386 bits (992), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/271 (72%), Positives = 218/271 (80%), Gaps = 6/271 (2%)

Query: 1   MASVAVASMFFAGDCRSFAVPPVSRALRNSLNKH----AFSWRCRSSHGSNPAITGESVT 56
           M SVAVASM FAG CR+ AVP  +RA+  SL KH    AF  RCRSSH S  AI GE+ +
Sbjct: 1   MCSVAVASMLFAGSCRTLAVPAAARAIPISLTKHLTNHAFRLRCRSSHNSFTAIAGETES 60

Query: 57  STIDDAGNLPXXXXXXXXYPKYDRLLPCPLHKSPPRIEHLVVSEGGPVLEYICKSLDLPP 116
           ST D A NL         YPKYDRLLPCP HKSPPRIEHLVV+E GPVLEYICK+L+LP 
Sbjct: 61  STTD-AVNL-TVTSSSNSYPKYDRLLPCPTHKSPPRIEHLVVTEEGPVLEYICKALNLPH 118

Query: 117 LFVADLIQFGAVYYALVXXXXXXSATPEQMRIFKQVTEPSVLQKRTSIKGKTVQAAQKTF 176
           LFVADLIQFGAVY+ALV      +AT EQ+R+FK+VTEP V++KR S+KGKT++ AQKTF
Sbjct: 119 LFVADLIQFGAVYFALVCPKPPPNATEEQIRVFKEVTEPLVVRKRASVKGKTIREAQKTF 178

Query: 177 RITHGDQFVEPGTYLRVHVHPKRFPRCYEIDWRSRVIAVAESYVVLDKPAGTSVGETRGN 236
           R+T  DQFVEPGTYLRVHVHPKRFPR YEIDWRSR+IAV ESYVVLDKPAGTSVG T  N
Sbjct: 179 RVTDVDQFVEPGTYLRVHVHPKRFPRSYEIDWRSRIIAVKESYVVLDKPAGTSVGGTTDN 238

Query: 237 IEESCVTFATRALGLTTPLLTTHQIDNCTEG 267
           IEESC TFATRALGLTTPL+TTHQIDNCTEG
Sbjct: 239 IEESCATFATRALGLTTPLMTTHQIDNCTEG 269


>Medtr2g022770.2 | RNA pseudouridine synthase | HC |
           chr2:7928768-7924511 | 20130731
          Length = 473

 Score =  386 bits (992), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/271 (72%), Positives = 218/271 (80%), Gaps = 6/271 (2%)

Query: 1   MASVAVASMFFAGDCRSFAVPPVSRALRNSLNKH----AFSWRCRSSHGSNPAITGESVT 56
           M SVAVASM FAG CR+ AVP  +RA+  SL KH    AF  RCRSSH S  AI GE+ +
Sbjct: 1   MCSVAVASMLFAGSCRTLAVPAAARAIPISLTKHLTNHAFRLRCRSSHNSFTAIAGETES 60

Query: 57  STIDDAGNLPXXXXXXXXYPKYDRLLPCPLHKSPPRIEHLVVSEGGPVLEYICKSLDLPP 116
           ST D A NL         YPKYDRLLPCP HKSPPRIEHLVV+E GPVLEYICK+L+LP 
Sbjct: 61  STTD-AVNL-TVTSSSNSYPKYDRLLPCPTHKSPPRIEHLVVTEEGPVLEYICKALNLPH 118

Query: 117 LFVADLIQFGAVYYALVXXXXXXSATPEQMRIFKQVTEPSVLQKRTSIKGKTVQAAQKTF 176
           LFVADLIQFGAVY+ALV      +AT EQ+R+FK+VTEP V++KR S+KGKT++ AQKTF
Sbjct: 119 LFVADLIQFGAVYFALVCPKPPPNATEEQIRVFKEVTEPLVVRKRASVKGKTIREAQKTF 178

Query: 177 RITHGDQFVEPGTYLRVHVHPKRFPRCYEIDWRSRVIAVAESYVVLDKPAGTSVGETRGN 236
           R+T  DQFVEPGTYLRVHVHPKRFPR YEIDWRSR+IAV ESYVVLDKPAGTSVG T  N
Sbjct: 179 RVTDVDQFVEPGTYLRVHVHPKRFPRSYEIDWRSRIIAVKESYVVLDKPAGTSVGGTTDN 238

Query: 237 IEESCVTFATRALGLTTPLLTTHQIDNCTEG 267
           IEESC TFATRALGLTTPL+TTHQIDNCTEG
Sbjct: 239 IEESCATFATRALGLTTPLMTTHQIDNCTEG 269


>Medtr2g022770.4 | RNA pseudouridine synthase | HC |
           chr2:7928768-7924511 | 20130731
          Length = 473

 Score =  386 bits (992), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/271 (72%), Positives = 218/271 (80%), Gaps = 6/271 (2%)

Query: 1   MASVAVASMFFAGDCRSFAVPPVSRALRNSLNKH----AFSWRCRSSHGSNPAITGESVT 56
           M SVAVASM FAG CR+ AVP  +RA+  SL KH    AF  RCRSSH S  AI GE+ +
Sbjct: 1   MCSVAVASMLFAGSCRTLAVPAAARAIPISLTKHLTNHAFRLRCRSSHNSFTAIAGETES 60

Query: 57  STIDDAGNLPXXXXXXXXYPKYDRLLPCPLHKSPPRIEHLVVSEGGPVLEYICKSLDLPP 116
           ST D A NL         YPKYDRLLPCP HKSPPRIEHLVV+E GPVLEYICK+L+LP 
Sbjct: 61  STTD-AVNL-TVTSSSNSYPKYDRLLPCPTHKSPPRIEHLVVTEEGPVLEYICKALNLPH 118

Query: 117 LFVADLIQFGAVYYALVXXXXXXSATPEQMRIFKQVTEPSVLQKRTSIKGKTVQAAQKTF 176
           LFVADLIQFGAVY+ALV      +AT EQ+R+FK+VTEP V++KR S+KGKT++ AQKTF
Sbjct: 119 LFVADLIQFGAVYFALVCPKPPPNATEEQIRVFKEVTEPLVVRKRASVKGKTIREAQKTF 178

Query: 177 RITHGDQFVEPGTYLRVHVHPKRFPRCYEIDWRSRVIAVAESYVVLDKPAGTSVGETRGN 236
           R+T  DQFVEPGTYLRVHVHPKRFPR YEIDWRSR+IAV ESYVVLDKPAGTSVG T  N
Sbjct: 179 RVTDVDQFVEPGTYLRVHVHPKRFPRSYEIDWRSRIIAVKESYVVLDKPAGTSVGGTTDN 238

Query: 237 IEESCVTFATRALGLTTPLLTTHQIDNCTEG 267
           IEESC TFATRALGLTTPL+TTHQIDNCTEG
Sbjct: 239 IEESCATFATRALGLTTPLMTTHQIDNCTEG 269


>Medtr7g113450.2 | RNA pseudouridine synthase | HC |
           chr7:46731924-46729842 | 20130731
          Length = 323

 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/268 (70%), Positives = 209/268 (77%), Gaps = 24/268 (8%)

Query: 4   VAVASMFFAGDCRSFAVPPVSRAL----RNSLNKHAFSWRCRSSHGSNPAITGESVTSTI 59
           VAVA M FAG  R   VP  + A+       LNKH F W CR S+ SN AI+ E+VT   
Sbjct: 2   VAVAPMLFAGSSRILGVPDTASAVPISVNKHLNKHEFGWCCRISNDSN-AIS-ETVT--- 56

Query: 60  DDAGNLPXXXXXXXXYPKYDRLLPCPLHKSPPRIEHLVVSEGGPVLEYICKSLDLPPLFV 119
                          YPKYDRLLPCP HK PPRIEHLVVS+ GPVL+YICK+LDLP LFV
Sbjct: 57  ---------------YPKYDRLLPCPSHKIPPRIEHLVVSQEGPVLQYICKALDLPHLFV 101

Query: 120 ADLIQFGAVYYALVXXXXXXSATPEQMRIFKQVTEPSVLQKRTSIKGKTVQAAQKTFRIT 179
           ADLIQFGAVY+ALV      +AT EQ+RIF+QVTEP VLQKR+S+KGKT++ AQKTFR+T
Sbjct: 102 ADLIQFGAVYFALVSPEPPPTATAEQIRIFEQVTEPLVLQKRSSLKGKTIREAQKTFRVT 161

Query: 180 HGDQFVEPGTYLRVHVHPKRFPRCYEIDWRSRVIAVAESYVVLDKPAGTSVGETRGNIEE 239
             +QFVEPGTYLRVHVHPKRFPRCYEIDWRSR+IAV ESYVVLDKPAGTSVGET GNIEE
Sbjct: 162 DANQFVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNIEE 221

Query: 240 SCVTFATRALGLTTPLLTTHQIDNCTEG 267
           SCVTFATRALGLTTPL+TTHQIDNCTEG
Sbjct: 222 SCVTFATRALGLTTPLITTHQIDNCTEG 249


>Medtr7g113450.1 | RNA pseudouridine synthase | HC |
           chr7:46731924-46728028 | 20130731
          Length = 450

 Score =  367 bits (942), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/268 (70%), Positives = 209/268 (77%), Gaps = 24/268 (8%)

Query: 4   VAVASMFFAGDCRSFAVPPVSRAL----RNSLNKHAFSWRCRSSHGSNPAITGESVTSTI 59
           VAVA M FAG  R   VP  + A+       LNKH F W CR S+ SN AI+ E+VT   
Sbjct: 2   VAVAPMLFAGSSRILGVPDTASAVPISVNKHLNKHEFGWCCRISNDSN-AIS-ETVT--- 56

Query: 60  DDAGNLPXXXXXXXXYPKYDRLLPCPLHKSPPRIEHLVVSEGGPVLEYICKSLDLPPLFV 119
                          YPKYDRLLPCP HK PPRIEHLVVS+ GPVL+YICK+LDLP LFV
Sbjct: 57  ---------------YPKYDRLLPCPSHKIPPRIEHLVVSQEGPVLQYICKALDLPHLFV 101

Query: 120 ADLIQFGAVYYALVXXXXXXSATPEQMRIFKQVTEPSVLQKRTSIKGKTVQAAQKTFRIT 179
           ADLIQFGAVY+ALV      +AT EQ+RIF+QVTEP VLQKR+S+KGKT++ AQKTFR+T
Sbjct: 102 ADLIQFGAVYFALVSPEPPPTATAEQIRIFEQVTEPLVLQKRSSLKGKTIREAQKTFRVT 161

Query: 180 HGDQFVEPGTYLRVHVHPKRFPRCYEIDWRSRVIAVAESYVVLDKPAGTSVGETRGNIEE 239
             +QFVEPGTYLRVHVHPKRFPRCYEIDWRSR+IAV ESYVVLDKPAGTSVGET GNIEE
Sbjct: 162 DANQFVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNIEE 221

Query: 240 SCVTFATRALGLTTPLLTTHQIDNCTEG 267
           SCVTFATRALGLTTPL+TTHQIDNCTEG
Sbjct: 222 SCVTFATRALGLTTPLITTHQIDNCTEG 249