Miyakogusa Predicted Gene

Lj6g3v1878770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1878770.1 Non Characterized Hit- tr|I1N005|I1N005_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,59.52,2e-18,
,CUFF.60020.1
         (110 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g022960.1 | hypothetical protein | HC | chr2:7997018-79977...   171   1e-43
Medtr3g463740.1 | hypothetical protein | HC | chr3:25548008-2554...    87   3e-18

>Medtr2g022960.1 | hypothetical protein | HC | chr2:7997018-7997755
           | 20130731
          Length = 111

 Score =  171 bits (433), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/110 (75%), Positives = 100/110 (90%)

Query: 1   MALSRKQFSYAKMDKEDPIELIHRRAQFLIHKLLEKADSRRKPSCLRIRISKLKVKIGNR 60
           MALSRK +SY+KMDKEDP ELIHRRAQFLI+K+LE+A+SRRK SCLRI+ISKLKVKIG R
Sbjct: 1   MALSRKPYSYSKMDKEDPEELIHRRAQFLIYKVLEQANSRRKSSCLRIKISKLKVKIGKR 60

Query: 61  LRRLRKRILSGVSVARVGIQGHVVSQMKTVKRMFGRGRQSIISLPPLMIK 110
           LRRLRK+I+S VS ARVGI GHVVSQ+KT KR+FGR +Q+++++P LMIK
Sbjct: 61  LRRLRKKIISSVSAARVGIHGHVVSQLKTWKRLFGREKQTLLTIPSLMIK 110


>Medtr3g463740.1 | hypothetical protein | HC |
          chr3:25548008-25547763 | 20130731
          Length = 81

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 55/70 (78%), Gaps = 1/70 (1%)

Query: 1  MALSRK-QFSYAKMDKEDPIELIHRRAQFLIHKLLEKADSRRKPSCLRIRISKLKVKIGN 59
          MALSR+ Q  Y+KMDKED  E  HR+AQFLI+K LEK DSRRKPS LRI+I KLKVK+GN
Sbjct: 1  MALSRRPQHGYSKMDKEDSEERKHRQAQFLIYKALEKVDSRRKPSYLRIKIFKLKVKLGN 60

Query: 60 RLRRLRKRIL 69
            RR++KR  
Sbjct: 61 SCRRIKKRFF 70