Miyakogusa Predicted Gene

Lj6g3v1812160.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1812160.1 Non Characterized Hit- tr|I3T823|I3T823_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,78.42,0,Ala_racemase_N,Alanine racemase, N-terminal;
UPF0001,Uncharacterised protein family UPF0001; no desc,CUFF.59961.1
         (143 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g024060.1 | proline synthetase associated protein | HC | c...   235   9e-63
Medtr3g053230.1 | proline synthetase associated protein | HC | c...   186   7e-48

>Medtr2g024060.1 | proline synthetase associated protein | HC |
           chr2:8557801-8560446 | 20130731
          Length = 244

 Score =  235 bits (600), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 112/140 (80%), Positives = 125/140 (89%)

Query: 4   SATTDGGPSPPLKAVLERVQQAAERSGRDVKEIRVVAASKMKPVSALQQVYDAGHRCFGE 63
           ++++ GG +  LKAVL+RV  AAERS RDVKEIRVVAASK K VS L+QVYDAGHRCFGE
Sbjct: 2   TSSSQGGAAASLKAVLDRVHHAAERSSRDVKEIRVVAASKTKSVSMLRQVYDAGHRCFGE 61

Query: 64  NYVQELIEKVPQLPDDIEWHFIGHLQSNKVKLLVAGVPNLAYVETVDDEKKANLLDRAVE 123
           NYVQE+IEK PQLP+DIEWHFIG+LQSNKVK L+AGVPNLAYVE+VDDEK ANLLDRA+ 
Sbjct: 62  NYVQEIIEKAPQLPEDIEWHFIGNLQSNKVKPLLAGVPNLAYVESVDDEKIANLLDRAIA 121

Query: 124 KIGRNPLKVFVEVNTSGETS 143
           KIGR PLKVFVEVNTSGETS
Sbjct: 122 KIGRKPLKVFVEVNTSGETS 141


>Medtr3g053230.1 | proline synthetase associated protein | HC |
           chr3:21149543-21142887 | 20130731
          Length = 244

 Score =  186 bits (472), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 88/143 (61%), Positives = 107/143 (74%)

Query: 1   MASSATTDGGPSPPLKAVLERVQQAAERSGRDVKEIRVVAASKMKPVSALQQVYDAGHRC 60
           M S    +       ++V+ RVQQAAERSG     +RVVA SK KP+S ++Q+YDAGHR 
Sbjct: 1   MTSPVMAEAAAVLAFRSVMLRVQQAAERSGTKPDRVRVVAVSKTKPISMIRQLYDAGHRV 60

Query: 61  FGENYVQELIEKVPQLPDDIEWHFIGHLQSNKVKLLVAGVPNLAYVETVDDEKKANLLDR 120
           FGENYVQE++EK PQLP DI+WHFIGHLQSNK K L++GVPNLA VE VD++K AN LDR
Sbjct: 61  FGENYVQEIVEKAPQLPQDIQWHFIGHLQSNKAKTLLSGVPNLAMVEGVDNQKVANNLDR 120

Query: 121 AVEKIGRNPLKVFVEVNTSGETS 143
            V  +GRN L+V V+VNTSGE S
Sbjct: 121 MVSNLGRNRLRVLVQVNTSGEES 143