Miyakogusa Predicted Gene

Lj6g3v1812090.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1812090.1 Non Characterized Hit- tr|I1QIS5|I1QIS5_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,61.97,1e-18,RcbX,Chaperonin-like RbcX,CUFF.60078.1
         (133 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g024300.1 | chaperonin-like RbcX protein | HC | chr2:87437...   211   2e-55

>Medtr2g024300.1 | chaperonin-like RbcX protein | HC |
           chr2:8743788-8745478 | 20130731
          Length = 173

 Score =  211 bits (536), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/124 (81%), Positives = 109/124 (87%), Gaps = 2/124 (1%)

Query: 1   MESSPNLALSQLPSVYSAIPSSKYRNYPFWPGNKRRSSP-STRIQCNKMFVPGFGEASPE 59
           MESS  L LSQLP VY  IPS+  +NYPFWP +KRRSS  STR+QCNKMFVPGFGEA+PE
Sbjct: 1   MESSSALTLSQLPYVYPTIPSTN-KNYPFWPASKRRSSQLSTRLQCNKMFVPGFGEATPE 59

Query: 60  AKAANNLHNFFTYTAVKIVAAQLESYNPEAYEELMDFVGRHPLDDGDKFCATMFRESSRH 119
           AKAA NLHNFFTYTAVKIVA+QLESYNPEAY ELM+FV +HPLDDGDKFCATMFRESSRH
Sbjct: 60  AKAAKNLHNFFTYTAVKIVASQLESYNPEAYVELMEFVDKHPLDDGDKFCATMFRESSRH 119

Query: 120 KNLG 123
           KNL 
Sbjct: 120 KNLA 123