Miyakogusa Predicted Gene

Lj6g3v1787840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1787840.1 Non Characterized Hit- tr|F4JGB3|F4JGB3_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At4,43.79,5e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL; DUF3537,Protein of unknown function DUF35,gene.g66725.t1.1
         (415 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g025160.1 | extracellular ligand-gated ion channel protein...   257   2e-68
Medtr2g025160.2 | extracellular ligand-gated ion channel protein...   256   3e-68
Medtr3g054010.1 | extracellular ligand-gated ion channel protein...   170   3e-42
Medtr1g009230.1 | extracellular ligand-gated ion channel protein...    80   4e-15
Medtr8g080210.1 | extracellular ligand-gated ion channel protein...    72   9e-13

>Medtr2g025160.1 | extracellular ligand-gated ion channel protein |
           HC | chr2:8949512-8952434 | 20130731
          Length = 431

 Score =  257 bits (656), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 116/186 (62%), Positives = 145/186 (77%), Gaps = 4/186 (2%)

Query: 42  HLEQRNRKFRSYLRWVFVDQSNVYKAVLSWSVFITLTFIVPIMLHFLFHCPKTCDADHRR 101
           H  +  R+FR+YLRWV+VDQSN+ KA +SWSVF TL ++VPI+ HFL  C  TCDADHRR
Sbjct: 21  HDGKELRRFRAYLRWVYVDQSNLCKAGISWSVFFTLAYVVPILSHFLLDCSTTCDADHRR 80

Query: 102 PYYIPAQVALSVLSTLSFFCLARWDRKYGLSEFLFVDKLNDGSLKIEQ----QMQATKKH 157
           PY++P Q++LSV +TLSF  L++WDRKYG S+FLF+DK++D SLKI++    QM+ T K 
Sbjct: 81  PYHVPVQISLSVFATLSFISLSKWDRKYGFSKFLFLDKVSDESLKIQRGYAIQMKRTMKL 140

Query: 158 ILSWGLPCFLASCAYKIWWYVSGSHQIPYYGERYTSNIILCTLDLWSWLYRTSIFFLIVS 217
           IL WGLPCF+  C YKIWWY+SG+ QIPYYGE Y S IILCTL+L SW YRTSIFFL+  
Sbjct: 141 ILLWGLPCFICQCVYKIWWYISGASQIPYYGEVYVSGIILCTLELCSWFYRTSIFFLVCV 200

Query: 218 ITLLSG 223
           +  L G
Sbjct: 201 LFRLIG 206



 Score =  172 bits (436), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 89/145 (61%), Positives = 111/145 (76%), Gaps = 1/145 (0%)

Query: 215 IVSITLLSGLFILLRTATKITHQAQSITALAAKWHIYATINLLDNIDGETSTTHVSTSKR 274
           +VSITL+SGL+ILLR+ATKITH+AQS+T LA+KWHI ATIN  DNIDGET T  ++ S +
Sbjct: 286 LVSITLVSGLYILLRSATKITHKAQSLTGLASKWHICATINSFDNIDGETPTALIA-SAQ 344

Query: 275 TRVPNTSLGLTXXXXXXXXXXLNNTKLLSLDTHDISFQKRQALVIYMENNRAGISVFGFM 334
               + S G +          LNNTK++ + T  ISF KRQALV YMENNRAGI+V+GFM
Sbjct: 345 AMAADISWGSSEDESGDEEDELNNTKMMPIQTRTISFHKRQALVTYMENNRAGITVYGFM 404

Query: 335 LDRTCLYSIFPVEMALCLWLLNKTI 359
           LDRT L+SIF +++ALCLWLLNKT+
Sbjct: 405 LDRTWLHSIFGIQLALCLWLLNKTV 429


>Medtr2g025160.2 | extracellular ligand-gated ion channel protein |
           HC | chr2:8949512-8952434 | 20130731
          Length = 408

 Score =  256 bits (654), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 116/186 (62%), Positives = 145/186 (77%), Gaps = 4/186 (2%)

Query: 42  HLEQRNRKFRSYLRWVFVDQSNVYKAVLSWSVFITLTFIVPIMLHFLFHCPKTCDADHRR 101
           H  +  R+FR+YLRWV+VDQSN+ KA +SWSVF TL ++VPI+ HFL  C  TCDADHRR
Sbjct: 21  HDGKELRRFRAYLRWVYVDQSNLCKAGISWSVFFTLAYVVPILSHFLLDCSTTCDADHRR 80

Query: 102 PYYIPAQVALSVLSTLSFFCLARWDRKYGLSEFLFVDKLNDGSLKIEQ----QMQATKKH 157
           PY++P Q++LSV +TLSF  L++WDRKYG S+FLF+DK++D SLKI++    QM+ T K 
Sbjct: 81  PYHVPVQISLSVFATLSFISLSKWDRKYGFSKFLFLDKVSDESLKIQRGYAIQMKRTMKL 140

Query: 158 ILSWGLPCFLASCAYKIWWYVSGSHQIPYYGERYTSNIILCTLDLWSWLYRTSIFFLIVS 217
           IL WGLPCF+  C YKIWWY+SG+ QIPYYGE Y S IILCTL+L SW YRTSIFFL+  
Sbjct: 141 ILLWGLPCFICQCVYKIWWYISGASQIPYYGEVYVSGIILCTLELCSWFYRTSIFFLVCV 200

Query: 218 ITLLSG 223
           +  L G
Sbjct: 201 LFRLIG 206



 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 72/103 (69%), Gaps = 1/103 (0%)

Query: 215 IVSITLLSGLFILLRTATKITHQAQSITALAAKWHIYATINLLDNIDGETSTTHVSTSKR 274
           +VSITL+SGL+ILLR+ATKITH+AQS+T LA+KWHI ATIN  DNIDGET T  ++ S +
Sbjct: 286 LVSITLVSGLYILLRSATKITHKAQSLTGLASKWHICATINSFDNIDGETPTALIA-SAQ 344

Query: 275 TRVPNTSLGLTXXXXXXXXXXLNNTKLLSLDTHDISFQKRQAL 317
               + S G +          LNNTK++ + T  ISF KRQAL
Sbjct: 345 AMAADISWGSSEDESGDEEDELNNTKMMPIQTRTISFHKRQAL 387


>Medtr3g054010.1 | extracellular ligand-gated ion channel protein |
           HC | chr3:21416001-21420848 | 20130731
          Length = 450

 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/179 (46%), Positives = 107/179 (59%), Gaps = 5/179 (2%)

Query: 41  SHLEQRNRKFRSYLRWVFVDQSNVYKAVLSWSVFITLTFIVPIMLHFLFHCPKTCDADHR 100
           SH+      FRSYLRW+ VDQSN   A LSW VF      VP + HF   C + CDA H 
Sbjct: 36  SHVNDELHTFRSYLRWMCVDQSNAIHATLSWFVFFVFALAVPALSHFFLAC-EDCDARHS 94

Query: 101 RPYYIPAQVALSVLSTLSFFCLARWDRKYGLSEFLFVDKLNDGSLKIEQ----QMQATKK 156
           RPY    Q++LS ++ LSF CL+ + +KYGL  FLF+DKL D S  +      Q+  + K
Sbjct: 95  RPYDSVVQISLSSVAVLSFLCLSTFVKKYGLRRFLFLDKLCDESENVRMNYMVQLNRSLK 154

Query: 157 HILSWGLPCFLASCAYKIWWYVSGSHQIPYYGERYTSNIILCTLDLWSWLYRTSIFFLI 215
            I  +  PCF+A   YKIWWY SG  QIP+ G  Y S+ + C L+L SWLYRT+  FL+
Sbjct: 155 LISVFSGPCFIAMATYKIWWYASGGSQIPFLGNVYLSDAVACILELCSWLYRTTTIFLV 213



 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 98/147 (66%), Gaps = 2/147 (1%)

Query: 215 IVSITLLSGLFILLRTATKITHQAQSITALAAKWHIYATINLLDNI-DGETSTTHVSTSK 273
           + S+TLLS L I+ R+ATKITH+AQ+IT LAAKWH+ AT++  D + +GET +  +S  +
Sbjct: 301 LCSVTLLSALSIMFRSATKITHKAQAITGLAAKWHVCATLDSFDGVGEGETLSAQISRER 360

Query: 274 RTRVPNTSLGLTXXXXXXXXXXLNNTKLL-SLDTHDISFQKRQALVIYMENNRAGISVFG 332
                 T               ++ TK++ S     IS+QKRQALV Y ENN+AGI+V+G
Sbjct: 361 IYPSVGTDGESETDDAGSEEDEIDTTKMIPSYSYSTISYQKRQALVNYFENNKAGITVYG 420

Query: 333 FMLDRTCLYSIFPVEMALCLWLLNKTI 359
           FMLDR+ L++IF +EM+L LWLL KTI
Sbjct: 421 FMLDRSTLHTIFGIEMSLVLWLLGKTI 447


>Medtr1g009230.1 | extracellular ligand-gated ion channel protein |
           HC | chr1:1241261-1238758 | 20130731
          Length = 446

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 4/186 (2%)

Query: 48  RKFRSYLRWVFVDQSNVYKAVLSWSVFITLTFIVPIMLHFLFHCPKTCDADHRRPYYIPA 107
           R FR  L+W  +D S+    ++S+  FI LTF+VP+          +             
Sbjct: 56  RNFRICLKWCALDHSSCVGKLISYVSFIFLTFVVPLFTTLFVQVSASSPEVDPISLNKLV 115

Query: 108 QVALSVLSTLSFFCLARWDRKYGLSEFLFVDKLNDGSLKIE----QQMQATKKHILSWGL 163
           Q+  S L+ +SFF L R+ R+YGL + LF+D L D +  +     ++++   +++    L
Sbjct: 116 QIPESALAIISFFTLYRFFRRYGLRQLLFLDALQDDTTYVRRGYARELEKAFRYLAYIIL 175

Query: 164 PCFLASCAYKIWWYVSGSHQIPYYGERYTSNIILCTLDLWSWLYRTSIFFLIVSITLLSG 223
           P F    A+KI ++ +     P     +  + I+    L SWLYRT ++ L+  I  L+ 
Sbjct: 176 PSFFVELAHKIIFFSAVKISAPNLSAGFPLHSIVFVFMLLSWLYRTGVYLLVCVIFKLTC 235

Query: 224 LFILLR 229
              +LR
Sbjct: 236 QLQILR 241



 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 17/146 (11%)

Query: 214 LIVSITLLSGLFILLRTATKITHQAQSITALAAKWHIYATINLLDNIDGETSTTHVSTSK 273
           +I S   LSG F+ +  A KITH+AQ I ++A +WH+     L+ N   E+     + S+
Sbjct: 315 VICSAVQLSGFFLCILGAAKITHRAQGIVSIATRWHM-----LVTNAFAESEQCKDNMSE 369

Query: 274 RTRVPNTSLGLTXXXXXXXXXXLNNTKLLSLDTHDISFQKRQALVIYMENNRAGISVFGF 333
                ++    +          L+            SFQ RQ+LV Y+++N  GI+++GF
Sbjct: 370 ALASDSSDSDSSDIHISIIPQRLS------------SFQTRQSLVTYLQHNHGGITLYGF 417

Query: 334 MLDRTCLYSIFPVEMALCLWLLNKTI 359
            LDR  L+++F  E ++ LW+L+K +
Sbjct: 418 ALDRGMLHTLFAFEFSIVLWILSKVV 443


>Medtr8g080210.1 | extracellular ligand-gated ion channel protein |
           HC | chr8:34461075-34457370 | 20130731
          Length = 498

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 81/146 (55%), Gaps = 5/146 (3%)

Query: 213 FLIVSITLLSGLFILLRTATKITHQAQSITALAAKWHIYATINLLDNIDGETSTTHVSTS 272
           F + ++  + G+ I L  AT+I+H+AQ + +LA++WH  AT    DN    +S +  S  
Sbjct: 303 FAVSTLVQVVGIIICLHAATRISHRAQGVVSLASRWHAIATCASSDNSQMRSSASAGSLE 362

Query: 273 KRTRVPNTSLGLTXXXXXXXXX--XLNNTKLLSLDTHDISFQKRQALVIYMENNRAGISV 330
               + +  L  +              NT+L+S  +   S  KRQA V+Y+++N  GI++
Sbjct: 363 VANHLNSIHLDYSESDLESLDFGGMAVNTQLISYMS---SHHKRQAFVMYLQSNPGGITI 419

Query: 331 FGFMLDRTCLYSIFPVEMALCLWLLN 356
           FG+ +DR+ + +IF +E++L  ++L+
Sbjct: 420 FGWTVDRSLVNTIFFLELSLVTFVLD 445