Miyakogusa Predicted Gene
- Lj6g3v1787830.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1787830.1 tr|Q2HTI8|Q2HTI8_MEDTR AT3g20300/MQC12_5
OS=Medicago truncatula GN=MTR_2g025160 PE=4
SV=1,63.05,0,DUF3537,Protein of unknown function DUF3537; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NU,NODE_65590_length_1665_cov_16.760962.path1.1
(458 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g025160.1 | extracellular ligand-gated ion channel protein... 521 e-148
Medtr2g025160.2 | extracellular ligand-gated ion channel protein... 444 e-125
Medtr3g054010.1 | extracellular ligand-gated ion channel protein... 380 e-105
Medtr1g009230.1 | extracellular ligand-gated ion channel protein... 185 9e-47
Medtr8g080210.1 | extracellular ligand-gated ion channel protein... 159 5e-39
>Medtr2g025160.1 | extracellular ligand-gated ion channel protein |
HC | chr2:8949512-8952434 | 20130731
Length = 431
Score = 521 bits (1341), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/452 (59%), Positives = 325/452 (71%), Gaps = 28/452 (6%)
Query: 14 LEENREVAHDEVNTSHACSSNNISCMEKGITSHDHDEVLGKISNIRRITFVSYLRWVYLD 73
+EE REV+ +N ++ GI HD E +RR F +YLRWVY+D
Sbjct: 1 MEEEREVSFLAMNKENS-----------GIY-HDGKE-------LRR--FRAYLRWVYVD 39
Query: 74 QSNVYRACFSWLVFFSMAFVFPVMSHFLLHCPTTCDADHTRPYYMPAQVXXXXXXXXXXX 133
QSN+ +A SW VFF++A+V P++SHFLL C TTCDADH RPY++P Q+
Sbjct: 40 QSNLCKAGISWSVFFTLAYVVPILSHFLLDCSTTCDADHRRPYHVPVQISLSVFATLSFI 99
Query: 134 XXXRWDSQYGWSAFLFLDKLNHDSLKIQQ----QMQATKKLILHWGLPCFLIQCAHKIWW 189
+WD +YG+S FLFLDK++ +SLKIQ+ QM+ T KLIL WGLPCF+ QC +KIWW
Sbjct: 100 SLSKWDRKYGFSKFLFLDKVSDESLKIQRGYAIQMKRTMKLILLWGLPCFICQCVYKIWW 159
Query: 190 YVSGLHQIPFYGERYTSSIILCALDLSSWLYRTSIFFLVCVLFRLICNLQILRLDDLASL 249
Y+SG QIP+YGE Y S IILC L+L SW YRTSIFFLVCVLFRLI LQI RLD+ A +
Sbjct: 160 YISGASQIPYYGEVYVSGIILCTLELCSWFYRTSIFFLVCVLFRLIGYLQIQRLDEFAPV 219
Query: 250 FQREIKVESILSEHRRISKNLRIISHRFRCFILASLLLVTAIQFNFLLMATKPHADVNVL 309
FQRE +V +IL EH RI +NLR+ISHRFR FIL+SLLLVTA Q FLLM KPHADV++L
Sbjct: 220 FQRETEVGTILLEHLRIRRNLRVISHRFRAFILSSLLLVTASQLIFLLMVIKPHADVDIL 279
Query: 310 KAGNLAIVSITLLSGLFILLRSATKITHKAQSITALAAKWHIHVTINSFDNIDGESHT-- 367
K G L +VSITL+SGL+ILLRSATKITHKAQS+T LA+KWHI TINSFDNIDGE+ T
Sbjct: 280 KGGELGLVSITLVSGLYILLRSATKITHKAQSLTGLASKWHICATINSFDNIDGETPTAL 339
Query: 368 -DSTETTVSNTSLGIMXXXXXXXXXXXXNTKLLPIYTHDISFQKRQALVTYMENNRAGIS 426
S + ++ S G NTK++PI T ISF KRQALVTYMENNRAGI+
Sbjct: 340 IASAQAMAADISWGSSEDESGDEEDELNNTKMMPIQTRTISFHKRQALVTYMENNRAGIT 399
Query: 427 VFGFMLDRTCLYSIFPVEMALCLWLLNKTIGI 458
V+GFMLDRT L+SIF +++ALCLWLLNKT+GI
Sbjct: 400 VYGFMLDRTWLHSIFGIQLALCLWLLNKTVGI 431
>Medtr2g025160.2 | extracellular ligand-gated ion channel protein |
HC | chr2:8949512-8952434 | 20130731
Length = 408
Score = 444 bits (1143), Expect = e-125, Method: Compositional matrix adjust.
Identities = 232/408 (56%), Positives = 283/408 (69%), Gaps = 28/408 (6%)
Query: 14 LEENREVAHDEVNTSHACSSNNISCMEKGITSHDHDEVLGKISNIRRITFVSYLRWVYLD 73
+EE REV+ +N ++ GI HD E +RR F +YLRWVY+D
Sbjct: 1 MEEEREVSFLAMNKENS-----------GIY-HDGKE-------LRR--FRAYLRWVYVD 39
Query: 74 QSNVYRACFSWLVFFSMAFVFPVMSHFLLHCPTTCDADHTRPYYMPAQVXXXXXXXXXXX 133
QSN+ +A SW VFF++A+V P++SHFLL C TTCDADH RPY++P Q+
Sbjct: 40 QSNLCKAGISWSVFFTLAYVVPILSHFLLDCSTTCDADHRRPYHVPVQISLSVFATLSFI 99
Query: 134 XXXRWDSQYGWSAFLFLDKLNHDSLKIQQ----QMQATKKLILHWGLPCFLIQCAHKIWW 189
+WD +YG+S FLFLDK++ +SLKIQ+ QM+ T KLIL WGLPCF+ QC +KIWW
Sbjct: 100 SLSKWDRKYGFSKFLFLDKVSDESLKIQRGYAIQMKRTMKLILLWGLPCFICQCVYKIWW 159
Query: 190 YVSGLHQIPFYGERYTSSIILCALDLSSWLYRTSIFFLVCVLFRLICNLQILRLDDLASL 249
Y+SG QIP+YGE Y S IILC L+L SW YRTSIFFLVCVLFRLI LQI RLD+ A +
Sbjct: 160 YISGASQIPYYGEVYVSGIILCTLELCSWFYRTSIFFLVCVLFRLIGYLQIQRLDEFAPV 219
Query: 250 FQREIKVESILSEHRRISKNLRIISHRFRCFILASLLLVTAIQFNFLLMATKPHADVNVL 309
FQRE +V +IL EH RI +NLR+ISHRFR FIL+SLLLVTA Q FLLM KPHADV++L
Sbjct: 220 FQRETEVGTILLEHLRIRRNLRVISHRFRAFILSSLLLVTASQLIFLLMVIKPHADVDIL 279
Query: 310 KAGNLAIVSITLLSGLFILLRSATKITHKAQSITALAAKWHIHVTINSFDNIDGESHT-- 367
K G L +VSITL+SGL+ILLRSATKITHKAQS+T LA+KWHI TINSFDNIDGE+ T
Sbjct: 280 KGGELGLVSITLVSGLYILLRSATKITHKAQSLTGLASKWHICATINSFDNIDGETPTAL 339
Query: 368 -DSTETTVSNTSLGIMXXXXXXXXXXXXNTKLLPIYTHDISFQKRQAL 414
S + ++ S G NTK++PI T ISF KRQAL
Sbjct: 340 IASAQAMAADISWGSSEDESGDEEDELNNTKMMPIQTRTISFHKRQAL 387
>Medtr3g054010.1 | extracellular ligand-gated ion channel protein |
HC | chr3:21416001-21420848 | 20130731
Length = 450
Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/407 (50%), Positives = 259/407 (63%), Gaps = 13/407 (3%)
Query: 62 TFVSYLRWVYLDQSNVYRACFSWLVFFSMAFVFPVMSHFLLHCPTTCDADHTRPYYMPAQ 121
TF SYLRW+ +DQSN A SW VFF A P +SHF L C CDA H+RPY Q
Sbjct: 44 TFRSYLRWMCVDQSNAIHATLSWFVFFVFALAVPALSHFFLACED-CDARHSRPYDSVVQ 102
Query: 122 VXXXXXXXXXXXXXXRWDSQYGWSAFLFLDKLNHDSLKIQQ----QMQATKKLILHWGLP 177
+ + +YG FLFLDKL +S ++ Q+ + KLI + P
Sbjct: 103 ISLSSVAVLSFLCLSTFVKKYGLRRFLFLDKLCDESENVRMNYMVQLNRSLKLISVFSGP 162
Query: 178 CFLIQCAHKIWWYVSGLHQIPFYGERYTSSIILCALDLSSWLYRTSIFFLVCVLFRLICN 237
CF+ +KIWWY SG QIPF G Y S + C L+L SWLYRT+ FLVCVLFRLIC+
Sbjct: 163 CFIAMATYKIWWYASGGSQIPFLGNVYLSDAVACILELCSWLYRTTTIFLVCVLFRLICH 222
Query: 238 LQILRLDDLASLFQREIKVESILSEHRRISKNLRIISHRFRCFILASLLLVTAIQFNFLL 297
LQILRL D A+LF + V S++SEH RI ++LRIISHR+R FIL +L+LVT QF LL
Sbjct: 223 LQILRLKDFATLFHVDSDVHSVMSEHLRIRRHLRIISHRYRAFILLALVLVTGSQFACLL 282
Query: 298 MATKPHADVNVLKAGNLAIVSITLLSGLFILLRSATKITHKAQSITALAAKWHIHVTINS 357
+ K D+NV K G LA+ S+TLLS L I+ RSATKITHKAQ+IT LAAKWH+ T++S
Sbjct: 283 VTMKARHDLNVYKTGELALCSVTLLSALSIMFRSATKITHKAQAITGLAAKWHVCATLDS 342
Query: 358 FDNIDGESHTDSTETTVSN--TSLGIMXXXXXXXXXXXXN----TKLLPIYTHD-ISFQK 410
FD + GE T S + + S+G + TK++P Y++ IS+QK
Sbjct: 343 FDGV-GEGETLSAQISRERIYPSVGTDGESETDDAGSEEDEIDTTKMIPSYSYSTISYQK 401
Query: 411 RQALVTYMENNRAGISVFGFMLDRTCLYSIFPVEMALCLWLLNKTIG 457
RQALV Y ENN+AGI+V+GFMLDR+ L++IF +EM+L LWLL KTIG
Sbjct: 402 RQALVNYFENNKAGITVYGFMLDRSTLHTIFGIEMSLVLWLLGKTIG 448
>Medtr1g009230.1 | extracellular ligand-gated ion channel protein |
HC | chr1:1241261-1238758 | 20130731
Length = 446
Score = 185 bits (469), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 195/395 (49%), Gaps = 18/395 (4%)
Query: 67 LRWVYLDQSNVYRACFSWLVFFSMAFVFPVMSHFLLHCPTTCDADHTRPYYMPAQVXXXX 126
L+W LD S+ S++ F + FV P+ + + + Q+
Sbjct: 62 LKWCALDHSSCVGKLISYVSFIFLTFVVPLFTTLFVQVSASSPEVDPISLNKLVQIPESA 121
Query: 127 XXXXXXXXXXRWDSQYGWSAFLFLDKLNHDSLKIQQ----QMQATKKLILHWGLPCFLIQ 182
R+ +YG LFLD L D+ +++ +++ + + + LP F ++
Sbjct: 122 LAIISFFTLYRFFRRYGLRQLLFLDALQDDTTYVRRGYARELEKAFRYLAYIILPSFFVE 181
Query: 183 CAHKIWWYVSGLHQIPFYGERYTSSIILCALDLSSWLYRTSIFFLVCVLFRLICNLQILR 242
AHKI ++ + P + I+ L SWLYRT ++ LVCV+F+L C LQILR
Sbjct: 182 LAHKIIFFSAVKISAPNLSAGFPLHSIVFVFMLLSWLYRTGVYLLVCVIFKLTCQLQILR 241
Query: 243 LDDLASLFQR-EIKVESILSEHRRISKNLRIISHRFRCFILASLLLVTAIQFNFLLMATK 301
+ + LF+ + I EH RI + L IISHR+R FI+ ++ ++ Q LL+
Sbjct: 242 FEGVHKLFEGCGSEAGVIFKEHVRIRRQLWIISHRYRFFIICCVVTMSVSQLGSLLLVLA 301
Query: 302 PHADVNVLKAGNLAIVSITLLSGLFILLRSATKITHKAQSITALAAKWHIHVTINSFDNI 361
++ +G+L I S LSG F+ + A KITH+AQ I ++A +WH+ VT N+F
Sbjct: 302 SKSEKTFFNSGDLVICSAVQLSGFFLCILGAAKITHRAQGIVSIATRWHMLVT-NAFA-- 358
Query: 362 DGESHTDSTETTVSNTSLGIMXXXXXXXXXXXXNTKLLPIYTHDISFQKRQALVTYMENN 421
+ E D+ +++ S + SFQ RQ+LVTY+++N
Sbjct: 359 ESEQCKDNMSEALASDSSDSDSSDIHISIIPQRLS----------SFQTRQSLVTYLQHN 408
Query: 422 RAGISVFGFMLDRTCLYSIFPVEMALCLWLLNKTI 456
GI+++GF LDR L+++F E ++ LW+L+K +
Sbjct: 409 HGGITLYGFALDRGMLHTLFAFEFSIVLWILSKVV 443
>Medtr8g080210.1 | extracellular ligand-gated ion channel protein |
HC | chr8:34461075-34457370 | 20130731
Length = 498
Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 111/410 (27%), Positives = 194/410 (47%), Gaps = 44/410 (10%)
Query: 66 YLRWVYLDQSNVYRACFSWLVFFSMAFVFPVMSHFLLHCPTTCDADHTRPYYMPAQVXXX 125
+L + + ++ + W FF++ P+++ ++ C + C+ M
Sbjct: 58 FLNILGFNPRSILSSIICWSGFFTLGVAVPLVALWMGDC-SECEKYELSGCEMVIVAFQA 116
Query: 126 XXXXXXXXXXXRWDSQYGWSAFLFLDKLNHDSLKIQQ----QMQATKKLILHWGLPCFLI 181
+YG FLF+D+ + Q+ + +L + W PCFL+
Sbjct: 117 SLAAVSLLCLSHCLRKYGLRRFLFVDRYTGHIAAFHRDYVNQISGSLRLFILWVFPCFLL 176
Query: 182 QCAHKIWWYVSGLHQIPF--YGERYTSSIILCALDLSSWLYRTSIFFLVCVLFRLICNLQ 239
+ +I +I + +G S I AL + SW Y ++I C++F L+CNLQ
Sbjct: 177 KTVREII-------RISYIQHGSWGFSIAIFIAL-VVSWTYVSAISLTACIMFHLVCNLQ 228
Query: 240 ILRLDDLASLFQREIKVESILSEHRRISKNLRIISHRFRCFILASLLLVTAIQFNFLLMA 299
++ DD L +RE V L EH R+ +L ISHRFR ++L L+VT Q LL
Sbjct: 229 VIHFDDYGKLLERESDVLVFLEEHMRLRYHLSKISHRFRVYLLLEFLVVTVSQVVTLLQI 288
Query: 300 TKPHADVNVLKAGNLAIVSITLLSGLFILLRSATKITHKAQSITALAAKWHIHVTINSFD 359
T + ++ G+ A+ ++ + G+ I L +AT+I+H+AQ + +LA++WH T S D
Sbjct: 289 TGYRDMITMVNGGDFAVSTLVQVVGIIICLHAATRISHRAQGVVSLASRWHAIATCASSD 348
Query: 360 NIDGES----------------HTDSTETTVSNTSLGIMXXXXXXXXXXXXNTKLLPIYT 403
N S H D +E+ + + G M NT+L+ +
Sbjct: 349 NSQMRSSASAGSLEVANHLNSIHLDYSESDLESLDFGGM----------AVNTQLISYMS 398
Query: 404 HDISFQKRQALVTYMENNRAGISVFGFMLDRTCLYSIFPVEMALCLWLLN 453
S KRQA V Y+++N GI++FG+ +DR+ + +IF +E++L ++L+
Sbjct: 399 ---SHHKRQAFVMYLQSNPGGITIFGWTVDRSLVNTIFFLELSLVTFVLD 445