Miyakogusa Predicted Gene

Lj6g3v1786770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1786770.1 Non Characterized Hit- tr|D7MV13|D7MV13_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,42.75,3e-18,coiled-coil,NULL; seg,NULL,CUFF.59928.1
         (208 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g025490.1 | hypothetical protein | HC | chr2:9103841-90975...   210   9e-55
Medtr3g054230.1 | hypothetical protein | HC | chr3:21514592-2150...    74   7e-14

>Medtr2g025490.1 | hypothetical protein | HC | chr2:9103841-9097566
           | 20130731
          Length = 208

 Score =  210 bits (534), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 118/192 (61%), Gaps = 4/192 (2%)

Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPXXXXXXXXXXXXXXXXXXXXXXX 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHV P                       
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVLPSSSSSNSNNNNANQNHANGSNGN 60

Query: 61  XXXXLLLYKWTPITQSQXXXXXX---XTKXXXXXXXXXXXRRKFKYIPVAVLXXXXXXXX 117
               LLL+KWTPITQSQ           K           RRKFKY+PVAVL        
Sbjct: 61  NGSHLLLFKWTPITQSQNNANGNGNGSVKDAAVEPVEEPPRRKFKYVPVAVLEEQKNEAT 120

Query: 118 XXXXXXXXXXXSKPIDVDSSAAEPTQKNETLDEKPDINDVPMEESESQDKNQVVRQDLNE 177
                      S PI+ DSSAAEPT KNETLDEKPDINDVPMEESE QDKNQVVRQDLNE
Sbjct: 121 EDEVAEKVEDESNPIEADSSAAEPTSKNETLDEKPDINDVPMEESEPQDKNQVVRQDLNE 180

Query: 178 STLDLSLGLTSH 189
           S LDLSLGLTSH
Sbjct: 181 S-LDLSLGLTSH 191


>Medtr3g054230.1 | hypothetical protein | HC |
           chr3:21514592-21509410 | 20130731
          Length = 160

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 74/185 (40%), Gaps = 36/185 (19%)

Query: 1   MEGVGA-RLGRSSTRYGPATVFTGPVRKWKKKWVHVSPXXXXXXXXXXXXXXXXXXXXXX 59
           ME VG+ RLGR+S+RYG   VF GPVRKW+KKWVHVSP                      
Sbjct: 1   METVGSTRLGRASSRYGAPAVFNGPVRKWEKKWVHVSP--------SSFNNNKKNNKDNS 52

Query: 60  XXXXXLLLYKWTPITQSQXXXXXXXTKXXXXXXXXXXXRRKFKYIPVAVLXXXXXXXXXX 119
                LLL +WTP+  S                     RRKF+Y P+A L          
Sbjct: 53  NEKSRLLLRRWTPVANSS----------SAEDVSDEPPRRKFRYTPIAALEEQKKGAVEK 102

Query: 120 XXXXXXXXXSKPIDVDSSAAEPTQKNETLDEKPDINDVPMEESESQDKNQVVRQDLNEST 179
                       I+ D   A  T  N  +  K ++N+V      S+D      +D N + 
Sbjct: 103 VEHEST------IESDQVTARQTNVNHEVHGKLNMNEV------SEDT-----KDSNMNE 145

Query: 180 LDLSL 184
           LDL  
Sbjct: 146 LDLGF 150