Miyakogusa Predicted Gene

Lj6g3v1766610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1766610.1 Non Characterized Hit- tr|C6JRY0|C6JRY0_SORBI
Putative uncharacterized protein Sb0013s009080
OS=Sorg,56.69,1e-18,seg,NULL; TFIIF_alpha,Transcription initiation
factor IIF, alpha subunit; TFIIF-ALPHA,NULL,CUFF.59956.1
         (301 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g025590.1 | transcription initiation factor IIF subunit al...   416   e-116
Medtr2g025620.1 | transcription initiation factor IIF subunit al...   389   e-108

>Medtr2g025590.1 | transcription initiation factor IIF subunit alpha
           | HC | chr2:9156803-9148860 | 20130731
          Length = 536

 Score =  416 bits (1068), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/302 (71%), Positives = 230/302 (76%), Gaps = 7/302 (2%)

Query: 1   MDLQLKSSCSGCGSTADLYGSNCKHMTLCLTCGKTMAENRAKCRDCGATLNRLIREYSVR 60
           MDLQLKSSCSGCG T  LYGSNCKH+T+C  CGKTMAENR+KC  CGA L RLIREY+VR
Sbjct: 1   MDLQLKSSCSGCGETTGLYGSNCKHLTICAPCGKTMAENRSKCSTCGALLTRLIREYNVR 60

Query: 61  ASSPSDKHYCIGRFMTGLPDFSRKKSAENKWSLQKDGLQGRQITDTLREKYKNKPWVLED 120
           ASS +DK+Y IGRFMTGLPDFS+KKSAENKWSLQKDGL+GRQ+TD  REKYKN+PW+LED
Sbjct: 61  ASSANDKNYFIGRFMTGLPDFSKKKSAENKWSLQKDGLKGRQVTDATREKYKNRPWLLED 120

Query: 121 ETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 180
           ETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
Sbjct: 121 ETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 180

Query: 181 RKKTADGYERWMMKVANNGPAAFGEHGRFDDKESITGGGRSRKKTGED-DEGNVSXXXXX 239
           RKKTADGY+RWMMK ANNGPAAFGEHG+ DDKES  GGGR RKKTG+D DEG  S     
Sbjct: 181 RKKTADGYQRWMMKAANNGPAAFGEHGKLDDKESNAGGGRGRKKTGDDEDEGPSSDKGEE 240

Query: 240 XXXXXXXXXXXXNRFGQNKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDE 299
                       N      K                            WEHEEIFTDDDE
Sbjct: 241 DEDEEVDRKKRPN------KKNTFDDDEEGPRGGDHDEDDYDVEKGDDWEHEEIFTDDDE 294

Query: 300 AV 301
           AV
Sbjct: 295 AV 296


>Medtr2g025620.1 | transcription initiation factor IIF subunit alpha
           | HC | chr2:9168202-9161990 | 20130731
          Length = 501

 Score =  389 bits (1000), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/301 (66%), Positives = 217/301 (72%), Gaps = 13/301 (4%)

Query: 1   MDLQLKSSCSGCGSTADLYGSNCKHMTLCLTCGKTMAENRAKCRDCGATLNRLIREYSVR 60
           M+LQLKSSC GCG T  LYGSNCKHMTLC TCGKTMA+NR+KC  CG TL RLIREY+V 
Sbjct: 1   MNLQLKSSCCGCGVTTGLYGSNCKHMTLCSTCGKTMAKNRSKCSTCGTTLTRLIREYNVH 60

Query: 61  ASSPSDKHYCIGRFMTGLPDFSRKKSAENKWSLQKDGLQGRQITDTLREKYKNKPWVLED 120
           ASS +DK Y +GRFM GLPDFS+KKSA+NKWSL+KDGL+GRQ+TD+ REKYKN+PW LED
Sbjct: 61  ASSATDKKYFLGRFMNGLPDFSKKKSAKNKWSLKKDGLKGRQVTDSTREKYKNRPWFLED 120

Query: 121 ETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN 180
           ETGQSQFQGHLEGSQSATYYLLMK KK          YNFNKVAQYKQLTLEEAEEKM N
Sbjct: 121 ETGQSQFQGHLEGSQSATYYLLMKGKK----------YNFNKVAQYKQLTLEEAEEKMNN 170

Query: 181 RKKTADGYERWMMKVANNGPAAFGEHGRFDDKESITGGGRSRKKTGEDDEGNVSXXXXXX 240
           RKKTADGY+RWMMK ANNGPAAFGEH + DDKES  GGGRSRKKTG+DD+   S      
Sbjct: 171 RKKTADGYQRWMMKAANNGPAAFGEHWKLDDKESNAGGGRSRKKTGDDDDEGPS--SDKG 228

Query: 241 XXXXXXXXXXXNRFGQNKKXX-XXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDE 299
                      NR G NKK                             WEHEEIFTDDDE
Sbjct: 229 EEDEDEEVDKKNRHGLNKKSGYDDDEGPRGGDLDDDDDDDYDVEKGDDWEHEEIFTDDDE 288

Query: 300 A 300
           A
Sbjct: 289 A 289