Miyakogusa Predicted Gene

Lj6g3v1753380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1753380.1 Non Characterized Hit- tr|I3T7V1|I3T7V1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,46,2e-16,RVT_3,NULL; Ribonuclease H-like,Ribonuclease H-like
domain; RNASE_H,Ribonuclease H domain; no descri,CUFF.59904.1
         (124 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g046400.1 | hypothetical protein | LC | chr1:17488301-1748...    66   6e-12
Medtr5g014470.1 | hypothetical protein | HC | chr5:4870620-48702...    60   4e-10
Medtr6g445010.1 | hypothetical protein | LC | chr6:15581215-1558...    54   3e-08
Medtr3g435920.1 | hypothetical protein | LC | chr3:11870396-1187...    53   6e-08
Medtr7g056410.1 | hypothetical protein | HC | chr7:19914751-1991...    53   6e-08
Medtr5g038610.1 | hypothetical protein | LC | chr5:16970065-1697...    52   1e-07
Medtr4g073630.1 | hypothetical protein | LC | chr4:27933246-2793...    52   1e-07
Medtr5g089930.1 | hypothetical protein | LC | chr5:39125627-3912...    49   1e-06
Medtr3g058290.1 | hypothetical protein | LC | chr3:23051480-2305...    49   1e-06
Medtr4g124240.1 | hypothetical protein | LC | chr4:51303625-5130...    49   1e-06
Medtr8g055950.1 | hypothetical protein | LC | chr8:24370555-2436...    48   2e-06
Medtr6g088150.1 | hypothetical protein | LC | chr6:33344781-3334...    48   2e-06
Medtr8g015630.1 | hypothetical protein | LC | chr8:5150097-51518...    47   3e-06
Medtr1g054775.1 | endonuclease/exonuclease/phosphatase family pr...    47   3e-06

>Medtr1g046400.1 | hypothetical protein | LC |
           chr1:17488301-17488678 | 20130731
          Length = 125

 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 2   LVSWPAPSLNQVALNVDGSSYGNPGRAGFGGLMRDHDGKWLIGFSGHVDFADSLEVELLA 61
           LVSW     N +  NV G+S GNP R+GFGGL+R+    W+IGF+      +++ +E  A
Sbjct: 40  LVSWHPRPDNVIKDNVGGNS-GNPNRSGFGGLLRNFLDGWIIGFARSFGHTNNINMEPHA 98

Query: 62  ILHGLRIAWDIGATDVSCRSD 82
           I + L I WD+G +D+ C SD
Sbjct: 99  IYYVLLITWDLGFSDIICESD 119


>Medtr5g014470.1 | hypothetical protein | HC |
          chr5:4870620-4870262 | 20130731
          Length = 92

 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 45/68 (66%)

Query: 28 AGFGGLMRDHDGKWLIGFSGHVDFADSLEVELLAILHGLRIAWDIGATDVSCRSDCTKAL 87
          AG  G++RD DG  L GFS  +  +++L V+L AI+HGL++  D G  +V C SD   AL
Sbjct: 24 AGPLGVIRDPDGARLCGFSEFIGISNNLHVKLFAIMHGLKLPLDRGHRNVICYSDPLHAL 83

Query: 88 SLIQNPIS 95
          +LIQ P++
Sbjct: 84 NLIQAPLN 91


>Medtr6g445010.1 | hypothetical protein | LC |
           chr6:15581215-15581897 | 20130731
          Length = 155

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (64%)

Query: 3   VSWPAPSLNQVALNVDGSSYGNPGRAGFGGLMRDHDGKWLIGFSGHVD 50
           V W     + + LNVDGS+  NPG+ GFGGL+R HDG +  GF G VD
Sbjct: 59  VCWNKGDGDAMILNVDGSALTNPGKEGFGGLVRKHDGTFQFGFYGSVD 106


>Medtr3g435920.1 | hypothetical protein | LC |
           chr3:11870396-11870728 | 20130731
          Length = 110

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 4/88 (4%)

Query: 2   LVSWPAPSLNQVALNVDGSSYGNPGRAGFGGLMRDHDGKWLIGFSGHV-DFADSLEVELL 60
           ++ W   + + + LNVDG+   +  R  FGG+ R++DG +L GFSG++ + +D L+VELL
Sbjct: 21  IIKWNNNNHSSIILNVDGNRLDSLIRVRFGGVSRNNDGNYLSGFSGYIHNSSDILQVELL 80

Query: 61  AILHGLRIAWDIGATDVSCRSDCTKALS 88
           +I   L +A  +   D++  S  T  LS
Sbjct: 81  SIYQDLLLAKTL---DINSPSGVTFYLS 105


>Medtr7g056410.1 | hypothetical protein | HC |
           chr7:19914751-19917543 | 20130731
          Length = 187

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 3   VSWPAPSLNQVALNVDGSSYGNPGRAGFGGLMRDHDGKWLIGFSGHVDFADSLEVELLAI 62
           + W AP   +V LNVDGS     G  G GGL+RD  G W+ GF  +    D+L VEL  I
Sbjct: 25  IKWKAPPFGKVKLNVDGSCD-QSGVIGSGGLIRDAGGNWVAGFLSNDGCGDALIVELFEI 83

Query: 63  LHGLRIAWDIGATDVSC 79
            +GL +  +     V C
Sbjct: 84  YNGLVLLINNSVLHVEC 100


>Medtr5g038610.1 | hypothetical protein | LC |
          chr5:16970065-16970280 | 20130731
          Length = 71

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%)

Query: 2  LVSWPAPSLNQVALNVDGSSYGNPGRAGFGGLMRDHDGKWLIGFSGHVDFADSLEVELLA 61
          +VSW     + + LNVD S+  N  + G+GGL+  HD  + +GF G V  ++ L  E+ A
Sbjct: 1  MVSWQYRDEDIMVLNVDRSALTNSRKVGYGGLIFKHDENFQLGFFGSVGISNILHAEIQA 60

Query: 62 ILHGLRIAWD 71
          +L  +   WD
Sbjct: 61 LLTSINFCWD 70


>Medtr4g073630.1 | hypothetical protein | LC |
           chr4:27933246-27932809 | 20130731
          Length = 145

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 32/57 (56%)

Query: 3   VSWPAPSLNQVALNVDGSSYGNPGRAGFGGLMRDHDGKWLIGFSGHVDFADSLEVEL 59
           V W  P    + +NVD S +GNP  AGFGGL+R+  G W+ G     D A +L  EL
Sbjct: 89  VCWYPPPEGYIKVNVDDSYFGNPANAGFGGLLRNDRGVWIHGLPKSCDRASNLLAEL 145


>Medtr5g089930.1 | hypothetical protein | LC |
          chr5:39125627-39124574 | 20130731
          Length = 91

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 13 VALNVDGSSYGNPGRAGFGGLMRDHDGKWLIGFSGHVDFADSLEVELLAILHGLRIAW 70
          + LNVDGSS  N GR+G+G L+R+    W+  FS    F  ++ V+ +A  +  R++W
Sbjct: 2  IKLNVDGSSISNSGRSGYGSLLRNSSRDWIFDFSERCGFTSNINVDSIA-GNRTRVSW 58


>Medtr3g058290.1 | hypothetical protein | LC |
          chr3:23051480-23052685 | 20130731
          Length = 106

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 29/40 (72%)

Query: 3  VSWPAPSLNQVALNVDGSSYGNPGRAGFGGLMRDHDGKWL 42
          VSW  P  + + + VDGSS+ NPGR+ F G++R+++G WL
Sbjct: 4  VSWIHPPKDTIKVKVDGSSFNNPGRSSFDGILRNNNGVWL 43


>Medtr4g124240.1 | hypothetical protein | LC |
          chr4:51303625-51303129 | 20130731
          Length = 100

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 3  VSWPAPSLNQVALNVDGSSYGNPGRAGFGGLMRDHDGKWLIGFSGHVDFA-DSLEVELLA 61
          + W   + +   LNVDGS  G+P + GFGG++R   G +L+ F   +  + D L  E+  
Sbjct: 24 IRWKDNNFSGAILNVDGSCLGSPIKTGFGGVLRADAGIFLLCFFSCIPGSYDILLGEIFV 83

Query: 62 ILHGLRIAWDIGATDV 77
          I HGL +A D+G  D+
Sbjct: 84 IYHGLIMAKDLGYVDL 99


>Medtr8g055950.1 | hypothetical protein | LC |
           chr8:24370555-24368676 | 20130731
          Length = 227

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 2   LVSWPAPSLNQVALNVDGSSYGNPGRAGFGGLMRDHDGKWLIGFSGHVDFADSLEVELL 60
            + W   + + V LNVDGS  G P RAGFG  +R+  G +L GFSG +D +  +   LL
Sbjct: 104 FIRWNNDNYSCVILNVDGSCMGTPVRAGFGRTIRNSVGYYLSGFSGCIDVSFDILTCLL 162


>Medtr6g088150.1 | hypothetical protein | LC |
          chr6:33344781-33344530 | 20130731
          Length = 83

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 2  LVSWPAPSLNQVALNVDGSSYGNPGRAGFGGLMRDHDGKWLIGFS 46
          +V+W  PS   V LN+DGS  G  G  G+GGL+RD+ G W++GFS
Sbjct: 21 MVNWTPPSDGCVKLNIDGSC-GASGDIGYGGLIRDNKGNWIVGFS 64


>Medtr8g015630.1 | hypothetical protein | LC | chr8:5150097-5151869
           | 20130731
          Length = 352

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 3   VSWPAPSLNQVALNVDGSSYGNPGRAGFGGLMRDHDGKWLIGFSGHVDFADSLEVELLAI 62
           V W  P +N    N+DG+S GNPG +   G+ RDH+  +L  FS  +  ++    EL A+
Sbjct: 279 VLWHPPLVNWAKCNIDGASQGNPGSSACIGIFRDHNANFLYCFSEPLGISNFYCAELCAM 338

Query: 63  LHGLR 67
           L  L 
Sbjct: 339 LRWLE 343


>Medtr1g054775.1 | endonuclease/exonuclease/phosphatase family protein
            | LC | chr1:23942081-23949866 | 20130731
          Length = 1456

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 31/60 (51%)

Query: 1    MLVSWPAPSLNQVALNVDGSSYGNPGRAGFGGLMRDHDGKWLIGFSGHVDFADSLEVELL 60
            M   W  P    + LN DG+       AG GGL RD DG+W+ G++  +   D+L  E+L
Sbjct: 1378 MTTCWKRPREGWIKLNSDGACKDMGVIAGCGGLFRDSDGRWIKGYTKKIGACDALHAEIL 1437