Miyakogusa Predicted Gene

Lj6g3v1752980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1752980.1 tr|F1KUK0|F1KUK0_ASCSU Thymidine kinase
OS=Ascaris suum PE=2 SV=1,40.98,8e-16,seg,NULL;
TK_CELLULAR_TYPE,Thymidine kinase, conserved site; THYMIDINE
KINASE,Thymidine kinase; TK,T,CUFF.59870.1
         (279 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g083230.1 | thymidine kinase-like protein | HC | chr3:3756...   318   4e-87
Medtr3g082350.1 | thymidine kinase-like protein | LC | chr3:3716...    93   3e-19
Medtr3g083240.1 | thymidine kinase-like protein | LC | chr3:3756...    78   9e-15

>Medtr3g083230.1 | thymidine kinase-like protein | HC |
           chr3:37562472-37564655 | 20130731
          Length = 226

 Score =  318 bits (814), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 149/202 (73%), Positives = 172/202 (85%), Gaps = 1/202 (0%)

Query: 77  GEIHVIVGPMFAGKTTSLIRRIQSESGNGRNVAIIKSSKDTRYGLDSIVTHDGTKLPCWA 136
           GEIH+ VGPMFAGKTTSL+RRI+SE  NGRNVA++KSSKD RY +DS+VTHDG K PCWA
Sbjct: 17  GEIHLFVGPMFAGKTTSLLRRIKSEVDNGRNVAMLKSSKDNRYAVDSVVTHDGIKFPCWA 76

Query: 137 LANLSSFKQKFGVDAYEQLDVIGIDEAQFFDDLYDFCREAADHDGKTVVVAGLDGNYLRR 196
           L +L  FK K+G +AY++LDVIGIDEAQFF+DLYDFC +AAD DGK VVVAGLDG+Y+RR
Sbjct: 77  LPDLMLFKDKYGHEAYQKLDVIGIDEAQFFEDLYDFCCKAADEDGKIVVVAGLDGDYMRR 136

Query: 197 NFGSVLDIIPLADSVTKLTARCEICGKHAFFTLRKTQETQVELIGGVDVYMPVCRQHYVN 256
           +FGSVL IIP+AD+VTKLTARCE+CGK AFFTLRKT E Q ELIGG D+YMPVCR HYVN
Sbjct: 137 SFGSVLHIIPIADTVTKLTARCELCGKRAFFTLRKTGEKQTELIGGADLYMPVCRHHYVN 196

Query: 257 GQVAMETT-RLVLESQKVECGS 277
           GQV +E   + V  SQKV CGS
Sbjct: 197 GQVVVEAAMKSVFGSQKVGCGS 218


>Medtr3g082350.1 | thymidine kinase-like protein | LC |
           chr3:37162914-37161261 | 20130731
          Length = 109

 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 48/65 (73%), Gaps = 4/65 (6%)

Query: 195 RRNFGSVLDIIPLADSVTKLTARCEICGKHAFFTLRKTQETQVELIGGVDVYMPVCRQHY 254
           RR FG V  II  ADS+TKLTARCE+C     FTLRKT E Q ELIGG D+YMPVC  HY
Sbjct: 8   RRTFGFVPHIIATADSITKLTARCELC----IFTLRKTGEKQTELIGGADLYMPVCSHHY 63

Query: 255 VNGQV 259
           VNGQV
Sbjct: 64  VNGQV 68


>Medtr3g083240.1 | thymidine kinase-like protein | LC |
           chr3:37565351-37566309 | 20130731
          Length = 134

 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 41/52 (78%)

Query: 194 LRRNFGSVLDIIPLADSVTKLTARCEICGKHAFFTLRKTQETQVELIGGVDV 245
           L R+FGSVL I P+A  VTKL ARCE+CGKHAFFTLRK +  Q ELIGG D+
Sbjct: 83  LLRSFGSVLHITPIAHIVTKLAARCELCGKHAFFTLRKMEGKQTELIGGADL 134