Miyakogusa Predicted Gene

Lj6g3v1752830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1752830.1 tr|B9IH40|B9IH40_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_575904 PE=4
SV=1,45.83,4e-17,coiled-coil,NULL; seg,NULL,CUFF.59855.1
         (130 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g026510.1 | hypothetical protein | HC | chr2:9587448-95881...   127   2e-30
Medtr4g133720.1 | hypothetical protein | HC | chr4:55939092-5593...    76   8e-15
Medtr5g097300.1 | hypothetical protein | HC | chr5:42616002-4261...    60   4e-10

>Medtr2g026510.1 | hypothetical protein | HC | chr2:9587448-9588191
           | 20130731
          Length = 141

 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/142 (54%), Positives = 90/142 (63%), Gaps = 13/142 (9%)

Query: 1   MGRKSQDPT-VVSSSIALLQERFRQLQRVKEMREERELQKMMLNEPKQFNSNS------- 52
           MGR++ DPT VV SSIALLQERFRQL+RVKEMREEREL+KM LNEPKQFNSN+       
Sbjct: 1   MGRENHDPTIVVHSSIALLQERFRQLERVKEMREERELKKM-LNEPKQFNSNTIPSYDYD 59

Query: 53  ---NAFS-HPELITXXXXXXXXXXXXXXXXASQDQDYRRSVQTPVSMNFCPTSTYAHAQV 108
                FS + ELI                  SQ  DY  S+++PVSMN C T+   + Q 
Sbjct: 60  QSTRLFSSNHELIIPSKSSPPHVSLSLWPTTSQQDDYYTSMKSPVSMNLCTTNYTKNLQT 119

Query: 109 SEKKVYECDSGSDPGVDTSLHL 130
           S K  ++CDS SD GVDTSLHL
Sbjct: 120 SWKNGHDCDSPSDSGVDTSLHL 141


>Medtr4g133720.1 | hypothetical protein | HC |
           chr4:55939092-55939798 | 20130731
          Length = 149

 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 71/157 (45%), Gaps = 35/157 (22%)

Query: 1   MGRKSQDPTVVSSSIALLQERFRQLQRVKEMREERELQKMMLN-EPKQFNSNSNA----- 54
           M RK  DP VV+SSI LLQERFRQLQRVKEMRE+REL KM+ N E K  N +S       
Sbjct: 1   MNRKIHDPVVVNSSIILLQERFRQLQRVKEMREKRELLKMLGNHETKHLNYSSRGMSHEP 60

Query: 55  ----FSHPELITXXXXXXXX---XXXXXXXXASQDQD-------------YRRSVQTPVS 94
               F HPELI                     SQ                   +V+T V 
Sbjct: 61  ITRLFFHPELININSSGSPSPPHVSLSLWPTTSQGMQDDNNNTSTSTSTSSSDTVETLVL 120

Query: 95  M-NFCPTSTYAHAQVSEKKVYECDSGSDPGVDTSLHL 130
             NFC  S     Q S   VY      D GVDTSLHL
Sbjct: 121 FKNFCSQS--KPLQASWNNVY------DSGVDTSLHL 149


>Medtr5g097300.1 | hypothetical protein | HC |
          chr5:42616002-42616980 | 20130731
          Length = 114

 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 37/44 (84%)

Query: 1  MGRKSQDPTVVSSSIALLQERFRQLQRVKEMREERELQKMMLNE 44
          MGR+  DPT+V+SSIALLQERFRQL++VKE RE ++L +++  E
Sbjct: 1  MGRQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLLRLLSTE 44