Miyakogusa Predicted Gene
- Lj6g3v1742810.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1742810.1 Non Characterized Hit- tr|A2X1J8|A2X1J8_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,35.84,2e-18,DUF588,Uncharacterised protein family UPF0497,
trans-membrane plant; seg,NULL; A_tha_TIGR01569: plan,CUFF.59853.1
(202 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g026530.1 | CASP POPTRDRAFT-like protein | HC | chr2:95933... 284 5e-77
Medtr2g026530.2 | CASP POPTRDRAFT-like protein | HC | chr2:95933... 242 1e-64
Medtr0693s0030.1 | CASP POPTRDRAFT-like protein | HC | scaffold0... 70 2e-12
Medtr5g076480.1 | CASP POPTRDRAFT-like protein | HC | chr5:32632... 68 4e-12
Medtr3g064310.1 | CASP POPTRDRAFT-like protein | HC | chr3:28945... 64 1e-10
Medtr5g041900.1 | casparian strip membrane protein | HC | chr5:1... 53 2e-07
Medtr0160s0040.1 | CASP POPTRDRAFT-like protein | HC | scaffold0... 53 2e-07
Medtr1g058540.1 | casparian strip membrane protein | HC | chr1:2... 53 2e-07
Medtr4g081880.1 | casparian strip membrane protein | HC | chr4:3... 50 1e-06
Medtr7g011090.1 | casparian strip membrane protein | HC | chr7:2... 49 2e-06
Medtr1g058560.1 | casparian strip membrane protein | HC | chr1:2... 49 2e-06
Medtr4g118800.1 | plant integral membrane protein | HC | chr4:49... 49 4e-06
>Medtr2g026530.1 | CASP POPTRDRAFT-like protein | HC |
chr2:9593399-9595933 | 20130731
Length = 201
Score = 284 bits (726), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 142/202 (70%), Positives = 158/202 (78%), Gaps = 1/202 (0%)
Query: 1 MSYLGVGVSPGTVPVYHNTNLKVWDRKIRITELVLRCXXXXXXXXXXXXXXTDSQVKVFF 60
MSYLGVGVSPGTVPVYH+TN+KV DR++RITELVLR TDSQV+ FF
Sbjct: 1 MSYLGVGVSPGTVPVYHSTNMKVLDRRVRITELVLRFVNLGLGVLAVVLIVTDSQVREFF 60
Query: 61 TIQKKAKFTDMKSLVFLVIANGLVAGYSLIQGMRCVVSMIRGKVLFSKPLAWAIFSGDQV 120
TIQKKAKFTDMK+LVFLV+AN + AGYSLIQG+RCVVSMI+G VLF+KPLAWAIFS DQV
Sbjct: 61 TIQKKAKFTDMKALVFLVVANAIAAGYSLIQGLRCVVSMIKGSVLFNKPLAWAIFSCDQV 120
Query: 121 MXXXXXXXXXXXXXXXXXXKLGQPELQWMKICDMYGKFCNQVGEGLASAFLASLSMVVLS 180
M K+GQ +LQWMKIC+MYGKFCNQVGEGLASAFL SLSMVV+S
Sbjct: 121 MAYITVAAVSAAAQSAVFAKMGQEQLQWMKICNMYGKFCNQVGEGLASAFLVSLSMVVVS 180
Query: 181 CISAFSLFRLYNGGNKIKNPNW 202
CISAFSLFRLY GG+KIKN W
Sbjct: 181 CISAFSLFRLY-GGSKIKNAYW 201
>Medtr2g026530.2 | CASP POPTRDRAFT-like protein | HC |
chr2:9593399-9595933 | 20130731
Length = 181
Score = 242 bits (618), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 123/182 (67%), Positives = 138/182 (75%), Gaps = 1/182 (0%)
Query: 21 LKVWDRKIRITELVLRCXXXXXXXXXXXXXXTDSQVKVFFTIQKKAKFTDMKSLVFLVIA 80
+KV DR++RITELVLR TDSQV+ FFTIQKKAKFTDMK+LVFLV+A
Sbjct: 1 MKVLDRRVRITELVLRFVNLGLGVLAVVLIVTDSQVREFFTIQKKAKFTDMKALVFLVVA 60
Query: 81 NGLVAGYSLIQGMRCVVSMIRGKVLFSKPLAWAIFSGDQVMXXXXXXXXXXXXXXXXXXK 140
N + AGYSLIQG+RCVVSMI+G VLF+KPLAWAIFS DQVM K
Sbjct: 61 NAIAAGYSLIQGLRCVVSMIKGSVLFNKPLAWAIFSCDQVMAYITVAAVSAAAQSAVFAK 120
Query: 141 LGQPELQWMKICDMYGKFCNQVGEGLASAFLASLSMVVLSCISAFSLFRLYNGGNKIKNP 200
+GQ +LQWMKIC+MYGKFCNQVGEGLASAFL SLSMVV+SCISAFSLFRLY GG+KIKN
Sbjct: 121 MGQEQLQWMKICNMYGKFCNQVGEGLASAFLVSLSMVVVSCISAFSLFRLY-GGSKIKNA 179
Query: 201 NW 202
W
Sbjct: 180 YW 181
>Medtr0693s0030.1 | CASP POPTRDRAFT-like protein | HC |
scaffold0693:2778-4089 | 20130731
Length = 184
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 5/166 (3%)
Query: 32 ELVLRCXXXXXXXXXXXXXXTDSQVKV-FFTIQKKAKFTDMKSLVFLVIANGLVAGYSLI 90
E++LR D++ KV I+KKA + D+ +L L+ AGY+++
Sbjct: 9 EVLLRVSAILFLVSTACIVAFDTETKVVILMIKKKATYKDLDALKILLYVTSAAAGYNML 68
Query: 91 QGMR---CVVSMIRG-KVLFSKPLAWAIFSGDQVMXXXXXXXXXXXXXXXXXXKLGQPEL 146
Q + S IR + +AW F DQ++ G
Sbjct: 69 QLCKHSFSACSTIRNFNDSYYMHMAWISFLLDQIVVYLTFATNTSAFEACLFALTGSEAF 128
Query: 147 QWMKICDMYGKFCNQVGEGLASAFLASLSMVVLSCISAFSLFRLYN 192
QWMK+C+ + +FC Q+G + ++AS+ M ++S ISA+ + R+Y+
Sbjct: 129 QWMKVCNKFTRFCYQIGGAILCCYIASILMAMISTISAYKVLRMYS 174
>Medtr5g076480.1 | CASP POPTRDRAFT-like protein | HC |
chr5:32632182-32630106 | 20130731
Length = 209
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 5/132 (3%)
Query: 68 FTDMKSLVFLVIANGLVAGYSLIQGMRCVVSMIRGKVLFSKPLAWAIFSGDQVMXXXXXX 127
++D+ + +LV ANG+ AGYSL + +V++ R + P AWA F DQV
Sbjct: 70 YSDLGAFRYLVHANGICAGYSLFSAV--IVAVPRPSTM---PKAWAFFLLDQVQTYIILA 124
Query: 128 XXXXXXXXXXXXKLGQPELQWMKICDMYGKFCNQVGEGLASAFLASLSMVVLSCISAFSL 187
+ G P W C +G FC+++ L F+A + ++LS IS++ L
Sbjct: 125 AGAVLTEVLYLAEYGVPTAGWSSACGSFGSFCHKIKASLVITFIAVVCYILLSLISSYRL 184
Query: 188 FRLYNGGNKIKN 199
F Y+ + N
Sbjct: 185 FSKYDAPAEFNN 196
>Medtr3g064310.1 | CASP POPTRDRAFT-like protein | HC |
chr3:28945240-28941390 | 20130731
Length = 217
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 67 KFTDMKSLVFLVIANGLVAGYSLIQGMRCVVSMIRGKVLFSKPLAWAIFSGDQVMXXXXX 126
+ D+ + +LV ANG+ AGYSL+ + VV+ R +L AW F DQV+
Sbjct: 77 SYNDLGAFRYLVHANGICAGYSLLSAV--VVAAPRPTLL----RAWTFFFLDQVLTYIIL 130
Query: 127 XXXXXXXXXXXXXKLGQPELQWMKICDMYGKFCNQVGEGLASAFLASLSMVVLSCISAFS 186
+ G W C +G+FC++V +A F+A V+LS IS+F
Sbjct: 131 SAGASSMEVVYLAENGDSATVWNSACGSFGQFCHKVTASVAITFVALFCYVILSLISSFK 190
Query: 187 LFRLYN 192
LF Y+
Sbjct: 191 LFSNYD 196
>Medtr5g041900.1 | casparian strip membrane protein | HC |
chr5:18399261-18401571 | 20130731
Length = 186
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 6/187 (3%)
Query: 5 GVGVSPGTVPVYHNTNLKVWDRKIRITELVLRCXXXXXXXXXXXXXXTDSQVKVFFT--I 62
G + G V +TN K R + I + +LR T + F T +
Sbjct: 3 GGSIELGEVSKNASTN-KGVKRGLSIMDFILRIIAGVATLASAVAMGTTDERLPFATSFV 61
Query: 63 QKKAKFTDMKSLVFLVIANGLVAGYSLIQGMRCVVSMIRGKVLFSKPLAWAIFSGDQVMX 122
Q +A++ D+ S VF V+AN +V GY + + ++ ++R + S+ L + D VM
Sbjct: 62 QFRAEYDDLPSFVFFVLANSIVCGYLALSLILSILHIVRSTAVKSRILLIVL---DMVMM 118
Query: 123 XXXXXXXXXXXXXXXXXKLGQPELQWMKICDMYGKFCNQVGEGLASAFLASLSMVVLSCI 182
G + W IC Y FC ++ L +++A +++ +
Sbjct: 119 GLLAAAASAAASIVYIAHYGNTQANWFPICQQYNSFCERISGSLIGSYIAVALFIIIILL 178
Query: 183 SAFSLFR 189
S ++ R
Sbjct: 179 SQSAISR 185
>Medtr0160s0040.1 | CASP POPTRDRAFT-like protein | HC |
scaffold0160:28011-30206 | 20130731
Length = 187
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 67 KFTDMKSLVFLVIANGLVAGYSLIQGMRCVVSMIRGKVLFSKPLAWAIFSGDQVMXXXXX 126
K++D+ L +++ + L AGY+++ V S +R L +K AW F DQV+
Sbjct: 55 KYSDISGLKYMIFVSALCAGYAIVAA---VCSWVR--YLMTK--AWIFFISDQVVAYLMV 107
Query: 127 XXXXXXXXXXXXXKLGQPELQWMKICDMYGKFCNQVGEGLASAFLASLSMVVLSCISAFS 186
G E W + C YGKFC++V L + VL+ ISAF
Sbjct: 108 TSIAATMEIYYLAYNGAREDSWSQACSSYGKFCSKVKLALILHMITFGCFFVLAIISAFR 167
Query: 187 LFRLYN 192
F +++
Sbjct: 168 AFSVFD 173
>Medtr1g058540.1 | casparian strip membrane protein | HC |
chr1:25798149-25796910 | 20130731
Length = 196
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 13/170 (7%)
Query: 24 WDRKIRITELVLRCXXXXXXXXXXXXXXTDSQVKVFFT--IQKKAKFTDMKSLVFLVIAN 81
W + I I + VLR T Q+ FFT +Q +A + + F VIA
Sbjct: 31 WKKGIAIMDFVLRLGAIAASLAATITMATSDQILPFFTQFLQFEASYDSFSTFQFFVIAM 90
Query: 82 GLVAGYSLIQGMRCVVSMIR----GKVLFSKPLAWAIFSGDQVMXXXXXXXXXXXXXXXX 137
V GY ++ +V++IR G LF L D V
Sbjct: 91 AFVGGYLVLSLPFSIVTIIRPHAPGPRLFLIIL-------DTVFLTLATASGASAAAMVS 143
Query: 138 XXKLGQPELQWMKICDMYGKFCNQVGEGLASAFLASLSMVVLSCISAFSL 187
G + W+ IC+ +G FC Q + ++F+ + ++VL +SA +L
Sbjct: 144 LAHNGNQDSNWLAICNQFGDFCAQTSGAVVASFITVVVLMVLVVMSALAL 193
>Medtr4g081880.1 | casparian strip membrane protein | HC |
chr4:31869526-31871135 | 20130731
Length = 189
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 5/168 (2%)
Query: 22 KVWDRKIRITELVLRCXXXXXXXXXXXXXXTDSQVKVFFT--IQKKAKFTDMKSLVFLVI 79
K R + I + +LR T Q F T ++ K F D+ + +F V
Sbjct: 20 KGMKRGLSIMDFILRIFAAMSTLGSALSMGTAKQTMPFATRFVRFKVSFHDLPTFLFFVT 79
Query: 80 ANGLVAGYSLIQGMRCVVSMIRGKVLFSKPLAWAIFSGDQVMXXXXXXXXXXXXXXXXXX 139
AN +V GY + + ++R + S+ L + D VM
Sbjct: 80 ANSIVCGYLALSLVLSFFHIVRTISVKSRILLVFL---DTVMFGLLTSGASAAAAIVYVA 136
Query: 140 KLGQPELQWMKICDMYGKFCNQVGEGLASAFLASLSMVVLSCISAFSL 187
G P W C Y FC ++ L +F+A + ++L +S S+
Sbjct: 137 HYGNPSANWFPFCQQYNSFCGRISGSLVGSFIAVVIFMILILMSGISI 184
>Medtr7g011090.1 | casparian strip membrane protein | HC |
chr7:2905231-2907425 | 20130731
Length = 186
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 5/166 (3%)
Query: 26 RKIRITELVLRCXXXXXXXXXXXXXXTDSQVKVFFT--IQKKAKFTDMKSLVFLVIANGL 83
R + I + +LR T + FFT ++ +A + D+ +L F V+A+ +
Sbjct: 23 RGVSILDFILRLIAIVATLASAIAMGTTDESLPFFTQFVRFRANYDDLPTLRFFVVASAI 82
Query: 84 VAGYSLIQGMRCVVSMIRGKVLFSKPLAWAIFSGDQVMXXXXXXXXXXXXXXXXXXKLGQ 143
V+GY ++ ++ +IR ++ + + D VM G
Sbjct: 83 VSGYLILSLPLSILHIIRSSAGMTRVIFIIL---DTVMLGLLTAGSSAAASIVYLAHKGN 139
Query: 144 PELQWMKICDMYGKFCNQVGEGLASAFLASLSMVVLSCISAFSLFR 189
+ W C Y FC ++ L +F+A ++L +SA L R
Sbjct: 140 RKANWFAFCQQYNSFCERISGSLIGSFIAIPLFIMLILLSALVLSR 185
>Medtr1g058560.1 | casparian strip membrane protein | HC |
chr1:25810191-25808737 | 20130731
Length = 195
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 5/166 (3%)
Query: 24 WDRKIRITELVLRCXXXXXXXXXXXXXXTDSQVKVFFT--IQKKAKFTDMKSLVFLVIAN 81
W + I I + +LR T Q FFT Q +A + + F +IA
Sbjct: 30 WKKGIAIMDFILRLGAIAAALAAAASMGTSDQSLPFFTQFFQFEASYDSFPAFQFFLIAM 89
Query: 82 GLVAGYSLIQGMRCVVSMIRGKVLFSKPLAWAIFSGDQVMXXXXXXXXXXXXXXXXXXKL 141
+VAGY ++ +V++IR + P + I D V
Sbjct: 90 AIVAGYLVLSLPFSIVAIIRPHA--TGPRLFLIIL-DTVFLTLATASAASAASIVYLAHN 146
Query: 142 GQPELQWMKICDMYGKFCNQVGEGLASAFLASLSMVVLSCISAFSL 187
G + W+ IC+ +G FC Q + ++F+ + ++VL +SA +L
Sbjct: 147 GNQDTNWLAICNQFGDFCAQTSGAVVASFITVVVLIVLVVMSALAL 192
>Medtr4g118800.1 | plant integral membrane protein | HC |
chr4:49224515-49222579 | 20130731
Length = 187
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 61/156 (39%), Gaps = 3/156 (1%)
Query: 32 ELVLRCXXXXXXXXXXXXXXTDSQVKVFFTIQKKAKFTDMKSLVFLVIANGLVAGYSLIQ 91
+L+LR T +Q V+ + + AKF + V+ V A + YS+I
Sbjct: 29 DLILRFLLFAASVASVVVMVTGNQT-VYLPVPRPAKFRYSPAFVYFVAAFSVAGLYSIIT 87
Query: 92 GMRCVVSMIRGKVLFSKPLAWAIFSGDQVMXXXXXXXXXXXXXXXXXXKLGQPELQWMKI 151
+S IR L +K L IF D VM G W KI
Sbjct: 88 TF-ISLSAIRKPNLKTKLLLHLIF-WDAVMLGILASATGTAGSVAYLGLKGNKHTDWHKI 145
Query: 152 CDMYGKFCNQVGEGLASAFLASLSMVVLSCISAFSL 187
C +Y KFC +G + S+ ++L ISA S+
Sbjct: 146 CHIYDKFCRHIGASVGVGLFGSIVTLLLIWISAHSI 181