Miyakogusa Predicted Gene

Lj6g3v1708410.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1708410.1 Non Characterized Hit- tr|I3SE30|I3SE30_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.05,0,polyprenyl_synt,Polyprenyl synthetase;
POLYPRENYL_SYNTHASE_2,Polyprenyl synthetase;
POLYPRENYL_SYNTH,CUFF.59830.1
         (220 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g027300.1 | geranylgeranyl pyrophosphate synthase | HC | c...   426   e-120
Medtr6g466010.1 | hypothetical protein | LC | chr6:23590146-2359...    51   7e-07

>Medtr2g027300.1 | geranylgeranyl pyrophosphate synthase | HC |
           chr2:9968618-9972615 | 20130731
          Length = 342

 Score =  426 bits (1096), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 197/210 (93%), Positives = 208/210 (99%)

Query: 1   MLDYNVPGGKLNRGLSVIDSYRLLKEGQALNDDEIFLASALGWCIEWLQAYFLVLDDIMD 60
           MLDYNVPGGKLNRGLSVIDSYRLLKEGQALNDDEIF ASALGWCIEWLQAYFLVLDDIMD
Sbjct: 38  MLDYNVPGGKLNRGLSVIDSYRLLKEGQALNDDEIFQASALGWCIEWLQAYFLVLDDIMD 97

Query: 61  NSHTRRGQPCWYRIPKVGLIAANDGILLRNHIPRILKKHFRGKPYYADLLDLFNEVEFQT 120
           NSHTRRGQPCWYR+PKVG+IAANDG+LLRNHIPRIL+KHF+GKPYY +LLDLFNEVEFQT
Sbjct: 98  NSHTRRGQPCWYRVPKVGMIAANDGVLLRNHIPRILRKHFKGKPYYVELLDLFNEVEFQT 157

Query: 121 ASGQMIDLITTLEGEKDLSKYTLSLHRRIVQYKTAYYSFYLPVACALLMAGENLDNHIDV 180
           A+GQMIDLITTLEGEKDLSKYTLSLHRRIVQYKTAYYSFYLPVACALLMAGENLDNH+DV
Sbjct: 158 AAGQMIDLITTLEGEKDLSKYTLSLHRRIVQYKTAYYSFYLPVACALLMAGENLDNHVDV 217

Query: 181 KDILVEMGTYFQVQDDYLDCFGDPQTIGKV 210
           K+ILVEMGTYFQVQDDYLDCFGDP+TIGK+
Sbjct: 218 KNILVEMGTYFQVQDDYLDCFGDPETIGKI 247


>Medtr6g466010.1 | hypothetical protein | LC |
          chr6:23590146-23590615 | 20130731
          Length = 95

 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 8  GGKLNRGLSVIDSYRLLKEGQALNDDEIFLASALGWCIEWLQAYFLVL 55
            KLN  LSVID+YR LKE  ALN DEIFLA  LG  I+W    FL+L
Sbjct: 8  ARKLNCRLSVIDNYRFLKE-YALNVDEIFLARTLGSSIKWESKSFLIL 54