Miyakogusa Predicted Gene

Lj6g3v1708390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1708390.1 Non Characterized Hit- tr|B9SGC5|B9SGC5_RICCO
Nuclear inhibitor of protein phosphatase-1, putative
O,55.1,4e-16,seg,NULL,CUFF.59838.1
         (98 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g027390.1 | nuclear inhibitor of protein phosphatase | HC ...    95   2e-20

>Medtr2g027390.1 | nuclear inhibitor of protein phosphatase | HC |
          chr2:10005512-10008434 | 20130731
          Length = 432

 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 57/98 (58%), Gaps = 2/98 (2%)

Query: 1  MYGRASGLDRFKKAQTLEPFXXXXXXXXXXXXQPSSKKVEGHSSAWPPAXXXXXXXXXXX 60
          MYGR SGLDRFKKA++LEPF            Q SSK V GHSSAWP             
Sbjct: 1  MYGRTSGLDRFKKAESLEPFSVNVNSSSRNVAQSSSKVV-GHSSAWP-LPQSKNSVHQSQ 58

Query: 61 XXXXXXXXKAVGVEAAPLLGQSQHVTQVGGGQSTWQPP 98
                  K VGVEAAPLLGQ+Q  TQ+GGGQS WQPP
Sbjct: 59 HQPQHGSQKGVGVEAAPLLGQNQQATQIGGGQSMWQPP 96