Miyakogusa Predicted Gene
- Lj6g3v1707190.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1707190.1 Non Characterized Hit- tr|Q84JP3|Q84JP3_ARATH
Putative uncharacterized protein (Fragment)
OS=Arabido,45,3e-19,HRDC-like,HRDC-like; DNA-DIRECTED RNA POLYMERASE
II,NULL; RNA_pol_Rpb4,RNA polymerase II, Rpb4; DNA-,CUFF.59813.1
(200 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g027530.1 | RNA polymerase II, Rpb4, core protein | HC | c... 218 3e-57
Medtr8g011890.2 | RNA polymerase II, Rpb4, core protein | HC | c... 89 4e-18
Medtr8g011890.1 | RNA polymerase II, Rpb4, core protein | HC | c... 89 4e-18
>Medtr2g027530.1 | RNA polymerase II, Rpb4, core protein | HC |
chr2:10081162-10085201 | 20130731
Length = 201
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 124/207 (59%), Positives = 154/207 (74%), Gaps = 13/207 (6%)
Query: 1 MSDKTGKGFTPFGKAGSLKGKDDSTPKSAQGRKAQFSKEGPFQSRMNGSPTPGGKGEKED 60
MSDK GKG + K G LKGKDDS KSA+ RK QFS EG F+SR NG PT GGKG D
Sbjct: 1 MSDKGGKGGSLLSKGG-LKGKDDSATKSAKARKVQFS-EGLFESRSNG-PTSGGKG---D 54
Query: 61 KAANGGKTSGSQD-----LKIDRELPANVKCLMDCEAADILQGIQEQMVTLSRDPTIKLP 115
K ANGGK+S ++D ++D+ELP N KCLMDCEAA +LQGIQ+QMV LSRDP+IK+P
Sbjct: 55 KVANGGKSSAAKDPHQFEHRVDQELPENFKCLMDCEAAVMLQGIQDQMVALSRDPSIKMP 114
Query: 116 GPFDKGLQYAKSSSKYT--NAKSIRRIVEPLANNGLTDCEVCVIANVCPETVDEIYALLP 173
FDKGL YAKSSS N +S+R +EPL N+ LT+ E+CVIANVCPET DE++ALLP
Sbjct: 115 ASFDKGLYYAKSSSSSKYSNPESVRHTLEPLMNHDLTESEICVIANVCPETADEVFALLP 174
Query: 174 SLKGKINLNRQLLEDSVNELAKLRRPV 200
SLK K +N Q +E++++ELAK ++ +
Sbjct: 175 SLKSKRGINSQPVEEALSELAKFKQMI 201
>Medtr8g011890.2 | RNA polymerase II, Rpb4, core protein | HC |
chr8:3253475-3257317 | 20130731
Length = 138
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 73/123 (59%), Gaps = 10/123 (8%)
Query: 56 GEKEDKAANGGKTSGSQDLKIDRELPANVKCLMDCEAADILQGIQEQMVTLSRDPTIKLP 115
GE+E+ AA +LKI E KCLM+CE + IL+ EQ+ S D ++
Sbjct: 3 GEEEENAA---------ELKIGDEF-LKAKCLMNCEVSLILEHKYEQLQQSSDDAMNQVS 52
Query: 116 GPFDKGLQYAKSSSKYTNAKSIRRIVEPLANNGLTDCEVCVIANVCPETVDEIYALLPSL 175
F+K LQY K S+Y N ++R++ E LA L + E+CV+ N+CPETV+E A++PS+
Sbjct: 53 QVFEKSLQYVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSI 112
Query: 176 KGK 178
K +
Sbjct: 113 KTR 115
>Medtr8g011890.1 | RNA polymerase II, Rpb4, core protein | HC |
chr8:3253475-3257309 | 20130731
Length = 138
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 73/123 (59%), Gaps = 10/123 (8%)
Query: 56 GEKEDKAANGGKTSGSQDLKIDRELPANVKCLMDCEAADILQGIQEQMVTLSRDPTIKLP 115
GE+E+ AA +LKI E KCLM+CE + IL+ EQ+ S D ++
Sbjct: 3 GEEEENAA---------ELKIGDEF-LKAKCLMNCEVSLILEHKYEQLQQSSDDAMNQVS 52
Query: 116 GPFDKGLQYAKSSSKYTNAKSIRRIVEPLANNGLTDCEVCVIANVCPETVDEIYALLPSL 175
F+K LQY K S+Y N ++R++ E LA L + E+CV+ N+CPETV+E A++PS+
Sbjct: 53 QVFEKSLQYVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSI 112
Query: 176 KGK 178
K +
Sbjct: 113 KTR 115