Miyakogusa Predicted Gene

Lj6g3v1692790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1692790.1 NODE_62797_length_208_cov_14.543269.path2.1
         (68 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g037345.1 | chromatin remodeling complex subunit | HC | ch...   115   6e-27
Medtr2g437480.1 | chromatin remodeling complex subunit | HC | ch...   115   1e-26

>Medtr8g037345.1 | chromatin remodeling complex subunit | HC |
           chr8:13958611-13951546 | 20130731
          Length = 929

 Score =  115 bits (289), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 48/68 (70%), Positives = 57/68 (83%)

Query: 1   MADSWNTKAKVDVYGINVAEDDIMFTEISAHPRHMKQMKSHQIEGFNFLVRNLVGDNPGG 60
           M+DS   K KVD +G+ +AE+D + T+ISAHPRH  QMK HQ+EGFNFLVRNLVGD+PGG
Sbjct: 324 MSDSSKDKGKVDAFGVKIAEEDFLVTDISAHPRHANQMKPHQVEGFNFLVRNLVGDHPGG 383

Query: 61  CILAHAPG 68
           CILAHAPG
Sbjct: 384 CILAHAPG 391


>Medtr2g437480.1 | chromatin remodeling complex subunit | HC |
           chr2:14725811-14732214 | 20130731
          Length = 1042

 Score =  115 bits (288), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/68 (69%), Positives = 58/68 (85%)

Query: 1   MADSWNTKAKVDVYGINVAEDDIMFTEISAHPRHMKQMKSHQIEGFNFLVRNLVGDNPGG 60
           M++SWN K K D++G+ +A+DD+  TEISAHP+H  QMK HQ+EGFNFLV NLVGD+PGG
Sbjct: 474 MSESWNAKEKADIFGVKIAKDDLSVTEISAHPQHANQMKPHQVEGFNFLVSNLVGDHPGG 533

Query: 61  CILAHAPG 68
           CILAHAPG
Sbjct: 534 CILAHAPG 541