Miyakogusa Predicted Gene

Lj6g3v1692480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1692480.1 Non Characterized Hit- tr|I3S0Q2|I3S0Q2_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=4
SV,69.7,4e-19,coiled-coil,NULL; Prefoldin_2,Prefoldin beta-like; no
description,NULL,CUFF.59791.1
         (84 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g029000.1 | prefoldin | HC | chr2:10798324-10796903 | 2013...   102   7e-23

>Medtr2g029000.1 | prefoldin | HC | chr2:10798324-10796903 |
          20130731
          Length = 68

 Score =  102 bits (254), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 56/66 (84%)

Query: 18 SATADLTKQLRSHEVAIAELNNLPSSRGVYHRNGNLFFRTTIQAATTLEQKQLDSAKAKL 77
          ++ +DL  ++RSHEV+IAELN LPSSR VY +NGNLFFRTT+Q A  +EQKQLDSAKAKL
Sbjct: 2  ASVSDLKNEMRSHEVSIAELNALPSSRTVYQKNGNLFFRTTVQTAANMEQKQLDSAKAKL 61

Query: 78 KTLNSS 83
          K LNSS
Sbjct: 62 KNLNSS 67