Miyakogusa Predicted Gene

Lj6g3v1690560.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1690560.2 Non Characterized Hit- tr|I3KGM3|I3KGM3_ORENI
Uncharacterized protein (Fragment) OS=Oreochromis
nilo,33.89,4e-17,LRR_4,Leucine rich repeat 4; LRR,Leucine-rich repeat;
no description,NULL; SUBFAMILY NOT NAMED,NULL;,CUFF.59764.2
         (189 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g029250.1 | tubulin folding cofactor E | HC | chr2:1091235...   339   9e-94

>Medtr2g029250.1 | tubulin folding cofactor E | HC |
           chr2:10912353-10904804 | 20130731
          Length = 534

 Score =  339 bits (870), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 167/190 (87%), Positives = 177/190 (93%), Gaps = 1/190 (0%)

Query: 1   MTPYKSELPLLKSIRVLVLNNTGVDWEQVELLRQPLMAIEELHIRGNNISRILPMTSSMV 60
           M+PYKSELPLLKSIRVLVLNNTGVDWEQVELLRQ L  IEELHI GN+ISRILP++SSMV
Sbjct: 198 MSPYKSELPLLKSIRVLVLNNTGVDWEQVELLRQSLTTIEELHIMGNSISRILPVSSSMV 257

Query: 61  QGFDSLRLLNLEDNCIAEWKEIMKLSQLRCLEQLYLNKNCLSSLFYPDNYS-LYESEVKC 119
           +GFDSLRLLNLEDNCIAEW EIMKLSQLRCLEQLYLNKNCLSSLFYPDN S  YESEV  
Sbjct: 258 RGFDSLRLLNLEDNCIAEWSEIMKLSQLRCLEQLYLNKNCLSSLFYPDNGSQYYESEVTG 317

Query: 120 CKPFQNLRCLLLGDNNISDLASVDSLNSFPNLVDIRLSGNPITDSTRGGIPRFVLIARLA 179
           CKPFQ LRCLLLGDNNISDLASVDSLN FPNLVDIRLSGNPITD+ +GG+PRFVLIARLA
Sbjct: 318 CKPFQKLRCLLLGDNNISDLASVDSLNLFPNLVDIRLSGNPITDAVKGGVPRFVLIARLA 377

Query: 180 KIQILNGSEV 189
           K+QILNGSE+
Sbjct: 378 KVQILNGSEI 387