Miyakogusa Predicted Gene

Lj6g3v1690560.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1690560.1 Non Characterized Hit- tr|I1L0C1|I1L0C1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13834
PE,82.73,0,CAP_GLY_2,CAP Gly-rich domain; LRR,Leucine-rich repeat;
CAP_GLY,CAP Gly-rich domain; LRR_4,Leucine r,CUFF.59764.1
         (433 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g029250.1 | tubulin folding cofactor E | HC | chr2:1091235...   735   0.0  
Medtr0004s0600.1 | tubulin folding cofactor B | HC | scaffold000...    51   3e-06
Medtr1g051215.1 | tubulin folding cofactor B | HC | chr1:2000513...    50   3e-06
Medtr1g051215.3 | tubulin folding cofactor B | HC | chr1:2000513...    50   3e-06

>Medtr2g029250.1 | tubulin folding cofactor E | HC |
           chr2:10912353-10904804 | 20130731
          Length = 534

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/434 (82%), Positives = 389/434 (89%), Gaps = 1/434 (0%)

Query: 1   MQDSPKPRQELRVGQRVHASGDSRRIGTVKYVGPVEGYSDIWVGVEWDNGEGKHDGSING 60
           MQDSP    E +VGQRVHASGDS RIGTVKY+G VEGYS+ WVGV+WD+G+GKHDGSING
Sbjct: 1   MQDSPNSTTEFQVGQRVHASGDSTRIGTVKYIGSVEGYSESWVGVDWDHGDGKHDGSING 60

Query: 61  VRYFHAKSEKSASFVRAQNLNQGISLLEALETRYRSHSTKDEEDEMYVLSTSNKRVSVQF 120
           VRYFHAKSE S SFVR +NL  GIS+LEALE RYRS STKDEEDEMYVLS+SNKRVS+Q 
Sbjct: 61  VRYFHAKSETSGSFVRPKNLCNGISVLEALEKRYRSSSTKDEEDEMYVLSSSNKRVSIQL 120

Query: 121 LGQNQIHDKLSRFEELTAISLSFMGISSPGDPCHINTTVPNIKALDLSGNLLSEWKDVGT 180
           LG++++ DKLSR EELT  SL+FMG+ SPG  C I+TTVPNI+ LDLSGNLLSEWKDVG 
Sbjct: 121 LGKSELDDKLSRIEELTNASLAFMGVGSPGVSCQISTTVPNIQELDLSGNLLSEWKDVGI 180

Query: 181 ICEQLPALGTLNLSYNLMTPYKSELPLLKSIRVLVLNNTGVDWEQVELLRQPLMAIEELH 240
           ICEQLPAL  LNLSYNLM+PYKSELPLLKSIRVLVLNNTGVDWEQVELLRQ L  IEELH
Sbjct: 181 ICEQLPALKALNLSYNLMSPYKSELPLLKSIRVLVLNNTGVDWEQVELLRQSLTTIEELH 240

Query: 241 IRGNNISRILPMTSSMVQGFDSLRLLNLEDNCIAEWKEIMKLSQLRCLEQLYLNKNCLSS 300
           I GN+ISRILP++SSMV+GFDSLRLLNLEDNCIAEW EIMKLSQLRCLEQLYLNKNCLSS
Sbjct: 241 IMGNSISRILPVSSSMVRGFDSLRLLNLEDNCIAEWSEIMKLSQLRCLEQLYLNKNCLSS 300

Query: 301 LFYPDNYS-LYESEVKCCKPFQNLRCLLLGDNNISDLASVDSLNSFPNLVDIRLSGNPIT 359
           LFYPDN S  YESEV  CKPFQ LRCLLLGDNNISDLASVDSLN FPNLVDIRLSGNPIT
Sbjct: 301 LFYPDNGSQYYESEVTGCKPFQKLRCLLLGDNNISDLASVDSLNLFPNLVDIRLSGNPIT 360

Query: 360 DSTRGGIPRFVLIARLAKIQILNGSEVTPRERKDSEIRYVRLVMSRLHASPGEIKQHPRF 419
           D+ +GG+PRFVLIARLAK+QILNGSE+T RERKDSEIRYVRLV+SRLHA+P EIKQHPRF
Sbjct: 361 DAVKGGVPRFVLIARLAKVQILNGSEITSRERKDSEIRYVRLVVSRLHANPEEIKQHPRF 420

Query: 420 SELKSFYGIEDEKP 433
           SELK+FY IED+ P
Sbjct: 421 SELKNFYEIEDQPP 434


>Medtr0004s0600.1 | tubulin folding cofactor B | HC |
           scaffold0004:338223-342204 | 20130731
          Length = 243

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 11  LRVGQRVHASGDSRRIGTVKYVGPVEGYS-DIWVGVEWDNGEGKHDGSINGVRYFHAKSE 69
           ++VG R      ++R G VK+VG  E      WVGV++D   GKHDG + GVRYF     
Sbjct: 159 IKVGSRCEVEPGAKR-GVVKFVGQAEPLGPGFWVGVQYDEPLGKHDGMVKGVRYFQCPP- 216

Query: 70  KSASFVRAQNLNQG 83
                VR + +  G
Sbjct: 217 SHGGIVRPEKVKVG 230


>Medtr1g051215.1 | tubulin folding cofactor B | HC |
           chr1:20005136-20001934 | 20130731
          Length = 243

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 11  LRVGQRVHASGDSRRIGTVKYVGPVEGYS-DIWVGVEWDNGEGKHDGSINGVRYFHAKSE 69
           ++VG R      ++R G VK+VG  E      WVGV++D   GKHDG + GVRYF     
Sbjct: 159 IKVGSRCEVEPGAKR-GVVKFVGQAEPLGPGFWVGVQYDEPLGKHDGMVKGVRYFQCPP- 216

Query: 70  KSASFVRAQNLNQG 83
                VR + +  G
Sbjct: 217 SHGGIVRPEKVKVG 230


>Medtr1g051215.3 | tubulin folding cofactor B | HC |
           chr1:20005136-20001934 | 20130731
          Length = 243

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 11  LRVGQRVHASGDSRRIGTVKYVGPVEGYS-DIWVGVEWDNGEGKHDGSINGVRYFHAKSE 69
           ++VG R      ++R G VK+VG  E      WVGV++D   GKHDG + GVRYF     
Sbjct: 159 IKVGSRCEVEPGAKR-GVVKFVGQAEPLGPGFWVGVQYDEPLGKHDGMVKGVRYFQCPP- 216

Query: 70  KSASFVRAQNLNQG 83
                VR + +  G
Sbjct: 217 SHGGIVRPEKVKVG 230