Miyakogusa Predicted Gene

Lj6g3v1690540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1690540.1 CUFF.59765.1
         (180 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g029340.1 | ROOT HAIR defective 3 GTP-binding family prote...   298   2e-81
Medtr8g016310.1 | ROOT HAIR defective 3 GTP-binding family prote...   274   4e-74
Medtr2g029300.1 | ROOT HAIR defective 3 GTP-binding protein | HC...   234   4e-62

>Medtr2g029340.1 | ROOT HAIR defective 3 GTP-binding family protein
           | HC | chr2:10952430-10963961 | 20130731
          Length = 833

 Score =  298 bits (763), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 139/156 (89%), Positives = 146/156 (93%), Gaps = 1/156 (0%)

Query: 4   IDDDCHATQLIDGDGTFNVAGLDTFIKTSSLAACGLSYAVVAIMGPQSSGKSTLMNHLFH 63
           +DD C ATQLIDGDG FN+ GLD FIKTS++A  GLSYAVVAIMGPQSSGKSTLMNHLFH
Sbjct: 5   VDDSC-ATQLIDGDGVFNLTGLDNFIKTSNMANTGLSYAVVAIMGPQSSGKSTLMNHLFH 63

Query: 64  TSFREMDAFRGRSQTTKGIWIAKCVGIEPCTVAMDLEGTDGRERGEDDTAFEKQSALFAL 123
           TSFREMDAFRGRSQTTKGIWIAKC GIEPCT+AMDLEGTDGRERGEDDTAFEKQSALFAL
Sbjct: 64  TSFREMDAFRGRSQTTKGIWIAKCTGIEPCTIAMDLEGTDGRERGEDDTAFEKQSALFAL 123

Query: 124 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVVCSM 159
           AVSDIVLINMWCHDIGREQAANKPLLKTVFQV+  +
Sbjct: 124 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRL 159


>Medtr8g016310.1 | ROOT HAIR defective 3 GTP-binding family protein
           | HC | chr8:5482218-5490686 | 20130731
          Length = 819

 Score =  274 bits (700), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 124/154 (80%), Positives = 140/154 (90%)

Query: 6   DDCHATQLIDGDGTFNVAGLDTFIKTSSLAACGLSYAVVAIMGPQSSGKSTLMNHLFHTS 65
           + C +TQLIDGDG FN +G++ F+K   L  CGLSYAVV+IMGPQSSGKSTL+N+LFHT+
Sbjct: 13  ETCCSTQLIDGDGLFNASGIEKFMKEVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFHTN 72

Query: 66  FREMDAFRGRSQTTKGIWIAKCVGIEPCTVAMDLEGTDGRERGEDDTAFEKQSALFALAV 125
           FREMDAF+GRSQTTKGIW+A+C GIEPCT+ MDLEGTDGRERGEDDTAFEKQSALFALAV
Sbjct: 73  FREMDAFKGRSQTTKGIWMARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 132

Query: 126 SDIVLINMWCHDIGREQAANKPLLKTVFQVVCSM 159
           SDIVLINMWCHDIGREQAANKPLLKTVFQV+  +
Sbjct: 133 SDIVLINMWCHDIGREQAANKPLLKTVFQVMMRL 166


>Medtr2g029300.1 | ROOT HAIR defective 3 GTP-binding protein | HC |
           chr2:10930336-10936870 | 20130731
          Length = 697

 Score =  234 bits (596), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 111/157 (70%), Positives = 132/157 (84%), Gaps = 2/157 (1%)

Query: 4   IDDD-CHATQLIDGDGTFNVAGLDTFIKTSSLAACGLSYAVVAIMGPQSSGKSTLMNHLF 62
           +DD   +  QLIDG+G FNV GLD  IKTS +A  GL Y VV+IMGPQSSGKS+L+N++F
Sbjct: 7   VDDSFANQVQLIDGEGVFNVTGLDNLIKTSDMANTGLDYVVVSIMGPQSSGKSSLLNNIF 66

Query: 63  HTSFREMDAFRGRSQTTKGIWIAKCVGIEPCTVAMDLEGTDGRERGEDDTAFEKQSALFA 122
            T F EM+A   RSQTTKGIWIAK  GI+PCT A+D+EGTDGRERGEDDTAFEKQSALFA
Sbjct: 67  CTKFEEMNALTCRSQTTKGIWIAKT-GIKPCTFALDIEGTDGRERGEDDTAFEKQSALFA 125

Query: 123 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVVCSM 159
           LA+S+IVLIN+WCHD+GREQAA+KPLL+TVFQV+  +
Sbjct: 126 LALSNIVLINLWCHDVGREQAASKPLLRTVFQVMLRL 162