Miyakogusa Predicted Gene
- Lj6g3v1689490.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1689490.1 Non Characterized Hit- tr|I3SN70|I3SN70_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2 SV,84.89,0,Subunit
III of photosystem I reaction centre, PsaF,Photosystem I PsaF,
reaction centre subunit III; ,CUFF.59784.1
(225 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g029370.1 | photosystem I reaction center subunit III | HC... 308 2e-84
>Medtr2g029370.1 | photosystem I reaction center subunit III | HC |
chr2:10976406-10974809 | 20130731
Length = 224
Score = 308 bits (790), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 145/154 (94%), Positives = 151/154 (98%)
Query: 72 DISGLTPCKESKQFAKREKQSIKKLESSLKLYAPDSAPALAIKASVEKTKRRFDNYAKQG 131
DISGLTPC+ESKQFAKREKQSIKKLESSLKLYAPDSAPALAIKA+VEKTKRRFDNY KQG
Sbjct: 71 DISGLTPCRESKQFAKREKQSIKKLESSLKLYAPDSAPALAIKATVEKTKRRFDNYGKQG 130
Query: 132 LLCGADGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAIRDEKKPTQKEII 191
LLCGADGLPHLIV+GDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAIRDEKKPTQKEII
Sbjct: 131 LLCGADGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEII 190
Query: 192 IDVPLASSLVFRGFSWPIAAYREFLNGELVAKDV 225
IDVPLAS LVFRGFSWPIAAYRE +NGEL+AKDV
Sbjct: 191 IDVPLASRLVFRGFSWPIAAYRELVNGELIAKDV 224