Miyakogusa Predicted Gene

Lj6g3v1653280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1653280.1 Non Characterized Hit- tr|I3SY35|I3SY35_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,89.36,3e-16,
,CUFF.59742.1
         (71 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0153s0030.1 | COP9 signalosome complex subunit 8 | HC | sca...    84   3e-17
Medtr2g007840.2 | COP9 signalosome complex subunit 8 | HC | chr2...    82   8e-17
Medtr2g007840.1 | COP9 signalosome complex subunit 8 | HC | chr2...    82   8e-17
Medtr0153s0060.1 | hypothetical protein | HC | scaffold0153:3010...    80   5e-16
Medtr2g007855.1 | COP9 signalosome complex subunit 8 | HC | chr2...    47   3e-06

>Medtr0153s0030.1 | COP9 signalosome complex subunit 8 | HC |
           scaffold0153:13039-16549 | 20130731
          Length = 174

 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 44/53 (83%)

Query: 19  SEFICDSLMLQQGWTADSVSRMLTVKKQPVVTEQKLDPSKLQRLTEYVFHLEH 71
           SE    S +LQQGWT D+ SRMLTVKKQPVV+ QKLDP KLQ+LTEYVFHLEH
Sbjct: 122 SEDAATSYVLQQGWTVDNASRMLTVKKQPVVSVQKLDPRKLQQLTEYVFHLEH 174


>Medtr2g007840.2 | COP9 signalosome complex subunit 8 | HC |
           chr2:1159794-1164110 | 20130731
          Length = 197

 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 25  SLMLQQGWTADSVSRMLTVKKQPVVTEQKLDPSKLQRLTEYVFHLEH 71
           S +LQQGWT D+ SRMLTVKKQPVV+ QKLDP KLQ+LTEYVFHLEH
Sbjct: 151 SYVLQQGWTVDNASRMLTVKKQPVVSVQKLDPCKLQQLTEYVFHLEH 197


>Medtr2g007840.1 | COP9 signalosome complex subunit 8 | HC |
           chr2:1159794-1164110 | 20130731
          Length = 197

 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 25  SLMLQQGWTADSVSRMLTVKKQPVVTEQKLDPSKLQRLTEYVFHLEH 71
           S +LQQGWT D+ SRMLTVKKQPVV+ QKLDP KLQ+LTEYVFHLEH
Sbjct: 151 SYVLQQGWTVDNASRMLTVKKQPVVSVQKLDPCKLQQLTEYVFHLEH 197


>Medtr0153s0060.1 | hypothetical protein | HC |
           scaffold0153:30103-32084 | 20130731
          Length = 146

 Score = 80.1 bits (196), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 40/45 (88%)

Query: 27  MLQQGWTADSVSRMLTVKKQPVVTEQKLDPSKLQRLTEYVFHLEH 71
           +LQQGWT D+ SRMLTVKKQPV + QKLDP KLQ+LTEYVFHLEH
Sbjct: 102 VLQQGWTVDNASRMLTVKKQPVASVQKLDPRKLQQLTEYVFHLEH 146


>Medtr2g007855.1 | COP9 signalosome complex subunit 8 | HC |
          chr2:1168020-1169741 | 20130731
          Length = 68

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 26/34 (76%)

Query: 19 SEFICDSLMLQQGWTADSVSRMLTVKKQPVVTEQ 52
          SE    S +LQQGWT D+ SRMLTVKKQPVV+ +
Sbjct: 34 SEDGATSYVLQQGWTVDNASRMLTVKKQPVVSAE 67