Miyakogusa Predicted Gene

Lj6g3v1629810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1629810.1 Non Characterized Hit- tr|K4A512|K4A512_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si033906,32.02,5e-19,HELICASE-RELATED,NULL; dsRNA_bind,Dicer
double-stranded RNA-binding fold; DICER_DSRBF,Dicer
double-s,NODE_66160_length_585_cov_47.982906.path1.1
         (184 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g060740.1 | endoribonuclease dicer-like protein | HC | chr...   239   1e-63
Medtr2g030490.1 | endoribonuclease dicer-like protein | HC | chr...   238   2e-63
Medtr8g069975.1 | endoribonuclease dicer-like protein | HC | chr...   227   4e-60

>Medtr1g060740.1 | endoribonuclease dicer-like protein | HC |
           chr1:26454644-26463238 | 20130731
          Length = 1385

 Score =  239 bits (609), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/183 (63%), Positives = 143/183 (78%), Gaps = 1/183 (0%)

Query: 2   LKNIACLEACKQLHKIGALTDKLVPDIXXXXXXXXXFGSEPYDEKQPSYVPRELVNQVLK 61
           LKNIACLEACK+LH IGALTD LVP I         FG+EPYDE QPSYVP ELVN++  
Sbjct: 611 LKNIACLEACKRLHMIGALTDNLVPSIVVEKAEVEDFGNEPYDEDQPSYVPLELVNRMPN 670

Query: 62  HGETTYHCYLIELKQNFSYDITVQNIYLATRVELNREIASMQFDMGFDKGSLSVSFIHKG 121
           +  T Y+CYL+ELKQNFSYDITVQ+I+LATRV+L+ E   MQF+MGFD+GSLSV+  +KG
Sbjct: 671 NSNTIYYCYLLELKQNFSYDITVQDIFLATRVKLDLETECMQFNMGFDRGSLSVNLKYKG 730

Query: 122 AIHLSPDMVSLCKRFQVTILRILLDHNMDRLQTALEKCCLEDGLEIDYLLLPSMVNEQGP 181
           +I+LSPD V LCKRFQV +L IL++H  D ++T  +K CLED LE DYLLLPS+  E+ P
Sbjct: 731 SINLSPDQVLLCKRFQVNVLGILMNHKTD-METVSDKFCLEDDLEFDYLLLPSIAIEETP 789

Query: 182 TID 184
           ++D
Sbjct: 790 SVD 792


>Medtr2g030490.1 | endoribonuclease dicer-like protein | HC |
           chr2:11495894-11486899 | 20130731
          Length = 1377

 Score =  238 bits (608), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/184 (64%), Positives = 143/184 (77%), Gaps = 1/184 (0%)

Query: 1   MLKNIACLEACKQLHKIGALTDKLVPDIXXXXXXXXXFGSEPYDEKQPSYVPRELVNQVL 60
            LKNIACLEACKQLHKIGALTD LVP I         FG+EPY E+QPSYVP ELVN + 
Sbjct: 608 FLKNIACLEACKQLHKIGALTDNLVPSIVVEEAEVEEFGNEPYSEEQPSYVPFELVNHMS 667

Query: 61  KHGETTYHCYLIELKQNFSYDITVQNIYLATRVELNREIASMQFDMGFDKGSLSVSFIHK 120
            +  T Y+CYLIELKQNFSYDITVQ+I+LATRVEL+ EI  MQFDM FD+GSL+V+  ++
Sbjct: 668 NNSSTIYYCYLIELKQNFSYDITVQDIFLATRVELDPEIGCMQFDMCFDRGSLAVNLRYR 727

Query: 121 GAIHLSPDMVSLCKRFQVTILRILLDHNMDRLQTALEKCCLEDGLEIDYLLLPSMVNEQG 180
           G I+LSPD V LCKRFQV+IL IL++  MD+ ++  EK  LED LEIDYLLLPS+  E+ 
Sbjct: 728 GNINLSPDQVLLCKRFQVSILGILMNSKMDK-ESFSEKYSLEDDLEIDYLLLPSIAIEET 786

Query: 181 PTID 184
           P++D
Sbjct: 787 PSVD 790


>Medtr8g069975.1 | endoribonuclease dicer-like protein | HC |
           chr8:29673147-29681500 | 20130731
          Length = 1219

 Score =  227 bits (579), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 114/184 (61%), Positives = 141/184 (76%), Gaps = 1/184 (0%)

Query: 1   MLKNIACLEACKQLHKIGALTDKLVPDIXXXXXXXXXFGSEPYDEKQPSYVPRELVNQVL 60
            LKNIACLEACK+LH IGALTD LVP I         FG+EPYDE+QPSYVP ELVN++ 
Sbjct: 612 FLKNIACLEACKKLHMIGALTDNLVPSIVAEEAEVEDFGNEPYDEEQPSYVPLELVNRMS 671

Query: 61  KHGETTYHCYLIELKQNFSYDITVQNIYLATRVELNREIASMQFDMGFDKGSLSVSFIHK 120
            +  T Y+CYLIELKQ FSYD+TVQ+I+LATRV+L+ E   M+FDM FD+GSLSV+  +K
Sbjct: 672 NNSCTIYYCYLIELKQKFSYDLTVQDIFLATRVKLDLESECMEFDMCFDRGSLSVNLRYK 731

Query: 121 GAIHLSPDMVSLCKRFQVTILRILLDHNMDRLQTALEKCCLEDGLEIDYLLLPSMVNEQG 180
           G+I+LSPD V LCKRFQV +L IL++H  D+ +T   K CLED LEIDYLLLPS+  E+ 
Sbjct: 732 GSINLSPDQVLLCKRFQVNVLGILMNHKTDK-ETDSGKFCLEDDLEIDYLLLPSIAIEET 790

Query: 181 PTID 184
            ++D
Sbjct: 791 LSVD 794