Miyakogusa Predicted Gene

Lj6g3v1629770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1629770.1 tr|G7IKX1|G7IKX1_MEDTR Endoribonuclease Dicer
OS=Medicago truncatula GN=MTR_2g030490 PE=4
SV=1,72.22,0.000000000001,no description,NULL; HELICASE-RELATED,NULL;
P-loop containing nucleoside triphosphate
hydrolases,NUL,NODE_57511_length_371_cov_17.010782.path2.1
         (52 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g030490.1 | endoribonuclease dicer-like protein | HC | chr...    79   1e-15
Medtr8g069975.1 | endoribonuclease dicer-like protein | HC | chr...    77   3e-15
Medtr1g060740.1 | endoribonuclease dicer-like protein | HC | chr...    77   4e-15

>Medtr2g030490.1 | endoribonuclease dicer-like protein | HC |
          chr2:11495894-11486899 | 20130731
          Length = 1377

 Score = 79.0 bits (193), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/55 (72%), Positives = 49/55 (89%), Gaps = 5/55 (9%)

Query: 2  VEEALPMELDN----QVVPDALPFARSYQIEALDKAIRENTIVFLDTGSGKTLIA 52
          +EEAL ME+D+    Q+ P+ALPFARSYQ+EAL+KAIRENTIV+L+TGSGKTLIA
Sbjct: 1  MEEAL-MEMDDYDEQQIRPNALPFARSYQLEALEKAIRENTIVYLETGSGKTLIA 54


>Medtr8g069975.1 | endoribonuclease dicer-like protein | HC |
          chr8:29673147-29681500 | 20130731
          Length = 1219

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/55 (70%), Positives = 47/55 (85%), Gaps = 5/55 (9%)

Query: 2  VEEALPMELDN----QVVPDALPFARSYQIEALDKAIRENTIVFLDTGSGKTLIA 52
          +EEAL M++D+    Q+ PD LPFARSYQ+EALDKAIRENTIV+L+TG GKTLIA
Sbjct: 1  MEEAL-MDIDDCYQEQIKPDTLPFARSYQLEALDKAIRENTIVYLETGCGKTLIA 54


>Medtr1g060740.1 | endoribonuclease dicer-like protein | HC |
          chr1:26454644-26463238 | 20130731
          Length = 1385

 Score = 76.6 bits (187), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/55 (70%), Positives = 46/55 (83%), Gaps = 5/55 (9%)

Query: 2  VEEALPMELDN----QVVPDALPFARSYQIEALDKAIRENTIVFLDTGSGKTLIA 52
          +EEA PME+D+    Q+ PD L FARSYQ+EALDKAIRENTIV+L+TG GKTLIA
Sbjct: 1  MEEA-PMEIDDCYQEQIRPDTLSFARSYQLEALDKAIRENTIVYLETGCGKTLIA 54