Miyakogusa Predicted Gene

Lj6g3v1618210.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1618210.2 Non Characterized Hit- tr|B4FJA0|B4FJA0_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,29.52,1e-16,coiled-coil,NULL; seg,NULL,CUFF.59681.2
         (368 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g031630.1 | cytomatrix-like protein | HC | chr2:11978695-1...   397   e-111
Medtr2g031630.2 | cytomatrix-like protein | HC | chr2:11978695-1...   393   e-109

>Medtr2g031630.1 | cytomatrix-like protein | HC |
           chr2:11978695-11974852 | 20130731
          Length = 382

 Score =  397 bits (1021), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/376 (59%), Positives = 271/376 (72%), Gaps = 11/376 (2%)

Query: 1   MRNSKNPDPSS---SSERKNWGNIFNLLVQMVRNQQNQLHSFANQHKLLEDRFKMQHERW 57
           MR SK P+PS+   S ER NW  IF+ LVQM++NQ+ QL SFA+Q   L+DR K+Q++RW
Sbjct: 1   MRKSKKPNPSNAVESVERGNWEKIFSTLVQMMKNQEKQLQSFADQQNFLQDRLKLQNQRW 60

Query: 58  LSDVRLHKDQISQMKGFLMFEEKKGLLEAAKADLTLGFKHREASMLKWILEHTEDELVDF 117
            SD++ +KDQISQM  FL+FEEKK LLE AKADL +G KHREAS+LKW+LE T+D+L DF
Sbjct: 61  ASDIQRYKDQISQMNTFLLFEEKKRLLEEAKADLMMGSKHREASILKWVLESTKDDLEDF 120

Query: 118 KACYDEYLSHISSDEQNQGTVFKDASKRIKETTDSGNXXXXXXXXXXXX-XXVIKDELSR 176
           KA +D YLS  SS+ ++QGT  KD  KR K T+ SG                  KDELSR
Sbjct: 121 KAGFD-YLSQKSSNGEDQGTALKDTDKRKKGTSSSGKKKSSSKIAEKEKCPDETKDELSR 179

Query: 177 LKGEYEKLALEKNSELSALLAEKKFVWNQYNIMEKDYNDKLRSKQAEVEKANEKIRALVS 236
           +K E EKL  EK+SEL ALL EK FVWNQ+N ME DY  KLRSKQ EVEK NEKI  LVS
Sbjct: 180 VKAECEKLVAEKDSELLALLQEKNFVWNQFNKMETDYTKKLRSKQEEVEKTNEKINILVS 239

Query: 237 SMEQLQSENIEKDSAISQLESKVADMEAETKRLNNQISGLSEELGSLRKCRNNQVAPVLK 296
           SME++QSENI+KDS IS+LESKV DM+AETKRLN +ISGLS EL SLRK +++ V P L 
Sbjct: 240 SMEEMQSENIKKDSRISELESKVTDMDAETKRLNKEISGLSTELESLRKLKSSHVKPFLN 299

Query: 297 RCTEGTKTSDSGTIKSSR-RKNVTFNLKKEICTPD--ADSPAKLSEKDKKSLKRKGGS-V 352
           RCT    TSDSG ++SSR R+N T    ++  TPD  A +    SEK+K+SLKRKG   +
Sbjct: 300 RCTAS--TSDSGKVESSRSRRNNTLKKDRDSFTPDEHASTSTNFSEKEKRSLKRKGSPII 357

Query: 353 PASETPKLFSSSFKVP 368
           P +ETPKLFSS+FKVP
Sbjct: 358 PTTETPKLFSSNFKVP 373


>Medtr2g031630.2 | cytomatrix-like protein | HC |
           chr2:11978695-11974852 | 20130731
          Length = 402

 Score =  393 bits (1010), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/375 (59%), Positives = 270/375 (72%), Gaps = 11/375 (2%)

Query: 1   MRNSKNPDPSS---SSERKNWGNIFNLLVQMVRNQQNQLHSFANQHKLLEDRFKMQHERW 57
           MR SK P+PS+   S ER NW  IF+ LVQM++NQ+ QL SFA+Q   L+DR K+Q++RW
Sbjct: 1   MRKSKKPNPSNAVESVERGNWEKIFSTLVQMMKNQEKQLQSFADQQNFLQDRLKLQNQRW 60

Query: 58  LSDVRLHKDQISQMKGFLMFEEKKGLLEAAKADLTLGFKHREASMLKWILEHTEDELVDF 117
            SD++ +KDQISQM  FL+FEEKK LLE AKADL +G KHREAS+LKW+LE T+D+L DF
Sbjct: 61  ASDIQRYKDQISQMNTFLLFEEKKRLLEEAKADLMMGSKHREASILKWVLESTKDDLEDF 120

Query: 118 KACYDEYLSHISSDEQNQGTVFKDASKRIKETTDSGNXXXXXXXXXXXX-XXVIKDELSR 176
           KA +D YLS  SS+ ++QGT  KD  KR K T+ SG                  KDELSR
Sbjct: 121 KAGFD-YLSQKSSNGEDQGTALKDTDKRKKGTSSSGKKKSSSKIAEKEKCPDETKDELSR 179

Query: 177 LKGEYEKLALEKNSELSALLAEKKFVWNQYNIMEKDYNDKLRSKQAEVEKANEKIRALVS 236
           +K E EKL  EK+SEL ALL EK FVWNQ+N ME DY  KLRSKQ EVEK NEKI  LVS
Sbjct: 180 VKAECEKLVAEKDSELLALLQEKNFVWNQFNKMETDYTKKLRSKQEEVEKTNEKINILVS 239

Query: 237 SMEQLQSENIEKDSAISQLESKVADMEAETKRLNNQISGLSEELGSLRKCRNNQVAPVLK 296
           SME++QSENI+KDS IS+LESKV DM+AETKRLN +ISGLS EL SLRK +++ V P L 
Sbjct: 240 SMEEMQSENIKKDSRISELESKVTDMDAETKRLNKEISGLSTELESLRKLKSSHVKPFLN 299

Query: 297 RCTEGTKTSDSGTIKSSR-RKNVTFNLKKEICTPD--ADSPAKLSEKDKKSLKRKGGS-V 352
           RCT    TSDSG ++SSR R+N T    ++  TPD  A +    SEK+K+SLKRKG   +
Sbjct: 300 RCTAS--TSDSGKVESSRSRRNNTLKKDRDSFTPDEHASTSTNFSEKEKRSLKRKGSPII 357

Query: 353 PASETPKLFSSSFKV 367
           P +ETPKLFSS+FKV
Sbjct: 358 PTTETPKLFSSNFKV 372