Miyakogusa Predicted Gene

Lj6g3v1588730.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1588730.2 Non Characterized Hit- tr|I1MGA1|I1MGA1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.1035
PE=,91.09,0,Coatomer_E,Coatomer, epsilon subunit; COATOMER SUBUNIT
EPSILON,NULL; COATOMER SUBUNIT EPSILON,Coatom,CUFF.59638.2
         (259 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g032130.1 | coatomer epsilon subunit | HC | chr2:12225625-...   493   e-139

>Medtr2g032130.1 | coatomer epsilon subunit | HC |
           chr2:12225625-12221311 | 20130731
          Length = 289

 Score =  493 bits (1268), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 233/258 (90%), Positives = 251/258 (97%)

Query: 1   MATPDHLFNLRNNFYLGAFQAAINSSDVNGLSDDDAVERDSLVHRCYIALGQLQFVISEI 60
           MATPDHLFNLRNNFYLGA+QAAINSS+V+ LS DD +ERD+LV RCYI+LGQLQFVISEI
Sbjct: 1   MATPDHLFNLRNNFYLGAYQAAINSSEVSNLSPDDIIERDTLVFRCYISLGQLQFVISEI 60

Query: 61  HDSSPTPLQAVKLLALYFSAPDNKESVIASLKEWLSDPAIGNNSTLRLVAGLIFLHEQDF 120
           +DS+PTPLQAVKLLALYFS+PD+KES IAS+KEWL+DPAIGNN+TLRLVAG+IFLHEQDF
Sbjct: 61  NDSAPTPLQAVKLLALYFSSPDSKESAIASIKEWLADPAIGNNATLRLVAGIIFLHEQDF 120

Query: 121 NEALKHTNAGGTLELHALNVQIFIKMHRSDYAERQLRIMQQIDEDHTLTQLANAWLDLAV 180
           NEALK+TNAGGT+EL ALNVQIFIKMHRSDYAERQLRIMQQIDEDHTLTQLANAWLDLAV
Sbjct: 121 NEALKYTNAGGTMELTALNVQIFIKMHRSDYAERQLRIMQQIDEDHTLTQLANAWLDLAV 180

Query: 181 GGSKIQEAYLIFQDLSERYQSTSLLLNGKAVCCMHMGNFDEAETLLVEALNKDARDPETL 240
           GG+KIQEA+LIFQDLSERYQSTSLLLNGKAVCCM MGNFDEAETLLVEALNKDARDPETL
Sbjct: 181 GGAKIQEAHLIFQDLSERYQSTSLLLNGKAVCCMQMGNFDEAETLLVEALNKDARDPETL 240

Query: 241 ANLVVCCLHLGKPSSKSF 258
           ANLVVCCLHLGKPSSKSF
Sbjct: 241 ANLVVCCLHLGKPSSKSF 258