Miyakogusa Predicted Gene

Lj6g3v1585630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1585630.1 Non Characterized Hit- tr|Q6SSE7|Q6SSE7_CHLRE
Putative uncharacterized protein (Fragment) OS=Chlamyd,40.52,2e-17,no
description,Armadillo-like helical; seg,NULL; ARM
repeat,Armadillo-type fold; SUBFAMILY NOT
NAMED,NODE_32863_length_1798_cov_44.391544.path2.1
         (492 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g075940.1 | ARM repeat protein | HC | chr7:28543135-285395...   613   e-175

>Medtr7g075940.1 | ARM repeat protein | HC | chr7:28543135-28539537
           | 20130731
          Length = 491

 Score =  613 bits (1580), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 308/490 (62%), Positives = 370/490 (75%), Gaps = 8/490 (1%)

Query: 2   AVDALSLEHPLSEDTXXXXXXXXXXXXXXXXXXXXXXISRSDYGRSDLASRKVLPAVLSI 61
             DA    HP+S+ +                       S+S   RS  A +K+LP +L++
Sbjct: 4   GTDAPFSNHPISQQSLNSLFDLSNSTTLQTSLETLIESSKSTSNRSLYACKKILPTILTV 63

Query: 62  VQSLTQTRHHVLSLCFKLFRNLCAGEAANQNLFLELGGV-AVVSGILRSQA-GSPCPDHG 119
           + S      H+LSLCFKL RNLCAGE  NQN+FLE  GV  VVS ILRS+  GS   D+ 
Sbjct: 64  LHS--PPSLHILSLCFKLLRNLCAGEILNQNMFLENDGVFIVVSSILRSEVVGS---DYM 118

Query: 120 LVRWGLQVLANVSLAGKQHQRAIWEELYPVGFGSLARLGTKQTCDPLCMLIYTCCDGNPE 179
           LVRWGLQVLANV LAGK+HQ+A+W+E++PVGF S+AR+G K+  DPLCM+IYTCCDGN +
Sbjct: 119 LVRWGLQVLANVCLAGKEHQKAVWDEMFPVGFLSVARIGKKEVNDPLCMVIYTCCDGNDQ 178

Query: 180 WFRELSNANGWHIMAQILRTASSASFDEDWIKLLISRICLEECLLPVLFSELRFVDAPKD 239
           WF E+ +  GW+++ +I+RTASSASF EDWIKLL+SRICLE+  L VLFS+LRF+D P  
Sbjct: 179 WFSEVCSDGGWNVLVEIVRTASSASFGEDWIKLLLSRICLEDSQLRVLFSKLRFMDIPDG 238

Query: 240 EDTESNEKEFSSEQAFLLRILPEILNERIRDVTVSEDVALFVFGIFKKSLGVLEHATRSK 299
           EDT++ + +FSSEQAFLL+I+ +ILNERI DVT+S +VA FV+GIFKKS+GVLEHA R K
Sbjct: 239 EDTKTKDDQFSSEQAFLLQIISDILNERIGDVTISLEVASFVYGIFKKSIGVLEHAVRGK 298

Query: 300 FGLPSGSAAVDVLGYTLTILRDICAEDSVRGNNGKEDIVDVXXXXXXXXXXXXXXXXXXP 359
            GLPSG   VDVLGY+LT+LRDICA DSVRGN+   ++VD+                  P
Sbjct: 299 SGLPSGITDVDVLGYSLTMLRDICAHDSVRGNSEDTEVVDMLLSYGLIELVFILLGDLEP 358

Query: 360 PAIIRKGIKQFENQDGASCSSKPCPYKGFRRDIVALIGNCLYRRKHVQDEIRQRNGILLL 419
           P IIRKG+K  EN DGAS SSKPCPYKGFRRDIVALIGNC+YRRKHVQDEIR RNGILLL
Sbjct: 359 PTIIRKGMKHSENPDGASSSSKPCPYKGFRRDIVALIGNCVYRRKHVQDEIRSRNGILLL 418

Query: 420 LQQCVTDEDNPFLREWGIWSVRNMLEGNEENQKLVAELEFQGSADALPEIAALGLRVEVD 479
           LQQCVTDEDNP+LREWGIW VRNMLEGNEENQK ++EL+ QGSAD +PEI+ALGLRVEVD
Sbjct: 419 LQQCVTDEDNPYLREWGIWCVRNMLEGNEENQKEISELQLQGSAD-VPEISALGLRVEVD 477

Query: 480 QRTRRAKLVN 489
           Q+TRRAKLVN
Sbjct: 478 QKTRRAKLVN 487