Miyakogusa Predicted Gene

Lj6g3v1572430.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1572430.1 Non Characterized Hit- tr|I1MGB0|I1MGB0_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,82.25,0,S1,Ribosomal
protein S1, RNA-binding domain; coiled-coil,NULL; Nucleic acid-binding
proteins,Nucleic,CUFF.59629.1
         (404 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g033020.1 | 30S ribosomal protein S1 | HC | chr2:12449707-...   670   0.0  
Medtr1g097610.1 | 30S ribosomal protein S1 | HC | chr1:44033341-...   104   2e-22
Medtr3g084860.1 | S1 RNA-binding domain protein | HC | chr3:3833...    85   2e-16
Medtr1g054710.1 | pre-rRNA processing protein Rrp5 | HC | chr1:2...    59   1e-08
Medtr6g088270.1 | elongation factor Ts protein | HC | chr6:33420...    58   2e-08
Medtr6g005460.1 | polyribonucleotide nucleotidyltransferase | HC...    57   3e-08
Medtr3g069250.1 | S1 RNA-binding domain protein | HC | chr3:3099...    52   1e-06
Medtr8g097290.1 | heat shock transcription factor 8, putative | ...    50   6e-06

>Medtr2g033020.1 | 30S ribosomal protein S1 | HC |
           chr2:12449707-12453501 | 20130731
          Length = 409

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/403 (80%), Positives = 368/403 (91%), Gaps = 7/403 (1%)

Query: 1   MAMASVAQQLSAVRWSPMLWR----RSQKQRRGAGTIVCSVAISNAQNKERAKLKQLFED 56
           MAMASVAQQL++ +WSP+L +    ++ KQRR    IVCS+AIS+A NKERAKLK+LF +
Sbjct: 1   MAMASVAQQLTSTKWSPLLCKPTTTQTHKQRRPG--IVCSIAISSANNKERAKLKELFYN 58

Query: 57  AYERCRTAPTDGVSFTLEQFTTALEKYDFDAEIGTKVKGTVFGTDASGAYVDITAKSTAY 116
           AYERCR AP +GVSFTL+QFT  LEKYD+++EIGTKVKGTVFGT+ SGA+VDIT+KSTAY
Sbjct: 59  AYERCRNAPMEGVSFTLDQFTETLEKYDYESEIGTKVKGTVFGTETSGAFVDITSKSTAY 118

Query: 117 LPLQEACIHKIKHVEEAGLVPGVRDEFVIIGENESDDTLFLSLKSIQFGLAWERCRQLQA 176
           LPL EA ++K++HVEEAG+ PGV++EFVI+G+NE DD + LSL+ IQF LAWERCRQLQA
Sbjct: 119 LPLYEASLYKLRHVEEAGIFPGVKEEFVIVGQNEIDDGMILSLRDIQFELAWERCRQLQA 178

Query: 177 EDAVVKGKIVNANKGGVVAEVEGLKGFVPFSQISTKSTGEELLEKEIPLKFVEVDEEQSR 236
           EDAVVKGKI++ANKGGVVAEVEGLKGFVPFSQ+STKS GEE++E E+PLKFVEVD+EQ+R
Sbjct: 179 EDAVVKGKIIDANKGGVVAEVEGLKGFVPFSQMSTKSPGEEIIEFEVPLKFVEVDQEQAR 238

Query: 237 LILSHRKAVADSQGQLGIGSVVTGSVQSLKPYGAFIDI-GGISGLLHVSQISHDRITDIS 295
           L+LSHRKAVA  QGQLGIGSVVTG+VQSLKPYGAFIDI GGISGLLHVSQISHDRI+DI 
Sbjct: 239 LVLSHRKAVAGIQGQLGIGSVVTGTVQSLKPYGAFIDIGGGISGLLHVSQISHDRISDIV 298

Query: 296 TVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIA 355
           TVLQPGD LKVMILSHDRERGRVSLSTKKLEPTPGDMIRNP LVFEKAEEMAQTFRQRIA
Sbjct: 299 TVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRIA 358

Query: 356 QAEAMARADMLRFQPESGLTLSSDGILGPLGSDLPAEGLDLSD 398
           QAEAMARADMLRFQPESGLTLSSDGILGPLGSDLP EGLDLS+
Sbjct: 359 QAEAMARADMLRFQPESGLTLSSDGILGPLGSDLPPEGLDLSE 401


>Medtr1g097610.1 | 30S ribosomal protein S1 | HC |
           chr1:44033341-44028473 | 20130731
          Length = 511

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 124/222 (55%), Gaps = 12/222 (5%)

Query: 166 LAWERCRQLQAEDAVVKGKIVNANKGGVVAEVEGLKGFVPFSQISTK-STGEELLEKEIP 224
           +AW R RQ+Q  +  ++ +I   N GG++  +EGL+ F+P +++ T+ ++  EL E    
Sbjct: 285 IAWHRVRQIQQLNEPIEVRITEWNTGGLLTTIEGLRAFLPKAELVTRVNSFTELKENVGR 344

Query: 225 LKFVE---VDEEQSRLILSHRKAVADSQGQLGIGSVVTGSVQSLKPYGAFIDIGGI--SG 279
             FVE   +DE ++ L+LS + A    +  L  G+++ G+V+ + PYGA I IG    SG
Sbjct: 345 RMFVEITRIDEAKNSLVLSEKGAW--EKAYLREGTLLDGTVKKIFPYGAQIKIGKTNRSG 402

Query: 280 LLHVSQISHDRITDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLV 339
           LLHVS I+   +T +S VL   + +KV+++       ++SLS   LE  PG  + N + V
Sbjct: 403 LLHVSNITRAEVTSVSDVLFVDEKVKVLVV-RSMFPDKISLSIADLESEPGLFLSNKERV 461

Query: 340 FEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGI 381
           F +A+ MA+ ++Q++       + + L   P S L   ++ +
Sbjct: 462 FMEADMMAKKYKQKLPPHIVSTKLEPL---PTSALPFENEAL 500


>Medtr3g084860.1 | S1 RNA-binding domain protein | HC |
           chr3:38332018-38337733 | 20130731
          Length = 399

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 95/180 (52%), Gaps = 18/180 (10%)

Query: 168 WERCRQLQAEDAVVKGKIVNANKGGVVAEVEGLKGFVPFSQIS-----------TKSTGE 216
           W+     +    +  G++   N GG++     + GF+P+ Q+S            K    
Sbjct: 104 WKAANAYRDSGLIYNGRVEGFNAGGLLVRFYSIMGFLPYPQLSPVHSCQEPDQTIKERAR 163

Query: 217 ELLEKEIPLKFVEVDEEQSRLILSHRKAVADSQGQ-LGIGSVVTGSVQSLKPYGAFIDI- 274
           EL+   + +K + VDEE+ +L+LS ++A      + + IG +  G V S++ YGAF+ + 
Sbjct: 164 ELIGAILSVKVIIVDEEKRKLVLSEKEASWFKHSKHINIGDLFEGRVGSVEDYGAFVHLR 223

Query: 275 -----GGISGLLHVSQISHDRITDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTP 329
                  ++GL+H+S++S D + D+   L+ G+ ++V ++S D  + R++LS K+LE  P
Sbjct: 224 FPDGLYHLTGLIHISEVSWDLVQDVRDFLREGEEVRVKVISIDTVKMRLTLSIKQLEEDP 283


>Medtr1g054710.1 | pre-rRNA processing protein Rrp5 | HC |
            chr1:23862430-23884853 | 20130731
          Length = 1911

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 62/254 (24%)

Query: 88   EIGTKVKGTVFGTDASGAYVDITAKSTAYLPLQEAC-IHKIKHVEEAGLVPGVRDEFVII 146
            E+   V+GT+        +VD++ +S+  +PLQ++  +H   H  +  +           
Sbjct: 1303 EVSNTVRGTI--------HVDLSLRSSNVMPLQDSADVHSNGHANDKCV----------- 1343

Query: 147  GENESDDTLFLSLKSIQFGLAWERCRQLQAEDAVVKGKIVN-ANKGGVVAEVEGLKGFVP 205
                                  E+   L   D VVKG +   ++KG  +     ++  + 
Sbjct: 1344 ----------------------EKIEDLHP-DMVVKGYVKTVSSKGCFILLSRKIEARIL 1380

Query: 206  FSQISTKSTGEELLEKEIPLKFVEVDEEQSRLILSHRKAVA--------------DSQGQ 251
             S +S +   +  L KE P+  + +    S   LS+R  V                  G+
Sbjct: 1381 LSNLSDQFVTD--LVKEFPVGKLVIGRVVSVEPLSNRVEVTLKTSTVSSSSKSVISDLGK 1438

Query: 252  LGIGSVVTGSVQSLKPYGAFI--DIGGISGLLHVSQISHDRITDISTVLQPGDILKVMIL 309
              +G V++GS++ ++P+G FI  D   + GL HVS+IS + I +I      G+ +  ++L
Sbjct: 1439 FHVGDVISGSIKRVEPFGLFIAIDNTNVVGLCHVSEISDNHIDNIEAKFGAGEKVNAIVL 1498

Query: 310  SHDRERGRVSLSTK 323
              D ER R+SL  K
Sbjct: 1499 KVDEERHRISLGMK 1512


>Medtr6g088270.1 | elongation factor Ts protein | HC |
           chr6:33420399-33413908 | 20130731
          Length = 1054

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 255 GSVVTGSVQSLKPYGAFIDIGGIS-GLLHVSQISHDRITDISTVLQPGDILKVMILSHDR 313
           G+  TG V+S++P+GAF+D G  + GL+H+S +S   + D+S+V+  G  + V ++  + 
Sbjct: 145 GAAFTGKVKSIQPFGAFVDFGAFTDGLVHISMLSDSFVKDVSSVVSLGQEVTVKVIEVNA 204

Query: 314 ERGRVSLSTKK 324
           E  R+SLS ++
Sbjct: 205 ETKRISLSMRE 215


>Medtr6g005460.1 | polyribonucleotide nucleotidyltransferase | HC |
           chr6:766009-755137 | 20130731
          Length = 973

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 2/102 (1%)

Query: 230 VDEEQSRLILSHRKAVADSQGQLGIGSVVTGSVQSLKPYGAFIDI-GGISGLLHVSQISH 288
           V + QS +  +  K V+    ++ +G +  G V S+K YGAF++  GG  GLLH+S++SH
Sbjct: 645 VTKNQSLMDKTLEKVVSIVGREIEVGGIYKGVVTSIKEYGAFVEFNGGKQGLLHISELSH 704

Query: 289 DRITDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPG 330
           + ++ IS ++  G  L +M +  D   G + LS K     PG
Sbjct: 705 EPVSKISDIVSIGQQLSLMCIGQDV-HGNIKLSLKAALRGPG 745


>Medtr3g069250.1 | S1 RNA-binding domain protein | HC |
           chr3:30999239-31000454 | 20130731
          Length = 180

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 250 GQLGIGSVVTGSVQSLKPYGAFIDIGG--ISGLLHVSQISHDRITDISTVLQPGDILKVM 307
           G+  +G V++GS++S++P G FI I    + GL HVS+IS   I +I      G+ +  +
Sbjct: 41  GKFHVGDVISGSIKSVEPSGLFIAIDNTKVVGLCHVSEISDKHIDNIEAKFGAGEKVNAI 100

Query: 308 ILSHDRERGRVSLSTK 323
           +L  D ER  +SL  K
Sbjct: 101 VLKVDEERHGISLGMK 116


>Medtr8g097290.1 | heat shock transcription factor 8, putative | HC
           | chr8:40760661-40752107 | 20130731
          Length = 888

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 43/80 (53%)

Query: 250 GQLGIGSVVTGSVQSLKPYGAFIDIGGISGLLHVSQISHDRITDISTVLQPGDILKVMIL 309
            +L +G +V   +Q +  +G F+++ G+S L+H S+IS D   D S   +    ++  + 
Sbjct: 699 ARLQVGDIVKCRIQKITYFGIFVEVEGVSALIHQSEISWDSTLDPSNYFKIDQAVEAKVH 758

Query: 310 SHDRERGRVSLSTKKLEPTP 329
             +   GR+ LS K++ P P
Sbjct: 759 QINSALGRIFLSLKEVTPDP 778