Miyakogusa Predicted Gene

Lj6g3v1561410.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1561410.1 Non Characterized Hit- tr|E9GES0|E9GES0_DAPPU
Putative uncharacterized protein OS=Daphnia pulex
GN=D,33.65,0.0001,IQ,IQ motif, EF-hand binding site,CUFF.59618.1
         (289 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g033040.1 | E3 ubiquitin-protein ligase UPL6 | HC | chr2:1...   484   e-137
Medtr2g033080.1 | E3 ubiquitin-protein ligase UPL6-like protein ...   406   e-113

>Medtr2g033040.1 | E3 ubiquitin-protein ligase UPL6 | HC |
           chr2:12491348-12468569 | 20130731
          Length = 1024

 Score =  484 bits (1245), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/289 (80%), Positives = 256/289 (88%), Gaps = 4/289 (1%)

Query: 1   MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRLERNRRLWLRQQNTAALKIQKCFRGRK 60
           MFFSGDPS RKRVDLGGRSSKERDRKNLLEQTRLERNRRLWLRQQN+AAL+IQKCFR +K
Sbjct: 1   MFFSGDPSNRKRVDLGGRSSKERDRKNLLEQTRLERNRRLWLRQQNSAALRIQKCFRAKK 60

Query: 61  VVRAEQSDLRERFLRIHGKNCQNLDRNAFGPDSDFLRQFLYFFNAENVDDFLVLVQICRL 120
           VVR EQS LR++FL I+GKNC N+DR AFGPDSDFLRQFLYFFNAEN DDFLVL+QICRL
Sbjct: 61  VVRTEQSKLRQKFLHIYGKNCLNVDRKAFGPDSDFLRQFLYFFNAENHDDFLVLLQICRL 120

Query: 121 LQQFVQESGDIVRLLAGADYSSVCALVNYRVKQLVHTCIRAIHHNRNQLKDQLLLTSKKS 180
           L +FVQESG+ VRL AG +YSSVCALVNYRVK+L + CIRA+HHNRNQLKDQLLLT K+S
Sbjct: 121 LLKFVQESGNAVRLFAGENYSSVCALVNYRVKKLAYNCIRAVHHNRNQLKDQLLLTPKES 180

Query: 181 NASAIPLLEVLVLLIDPKLPWSCKIVGYLSQNNAFSLLREIVLTGKDNVESCGYSEEGSS 240
           NASAIPLLE++VLLID KLPWSC IVG+ SQNN F+LLR+I+LTGKDN E C     GSS
Sbjct: 181 NASAIPLLEIIVLLIDLKLPWSCVIVGHFSQNNGFALLRQIILTGKDNAEKC----IGSS 236

Query: 241 LERLLTVLICHIGQKPCICSHIDQRYSFSSQILTIPFLWHTFPNLRQVF 289
           LE +LT ++CHI QKPCICS ID RYSFS QILTIPFLWH FPNLRQVF
Sbjct: 237 LEHVLTGVMCHIRQKPCICSDIDPRYSFSLQILTIPFLWHVFPNLRQVF 285


>Medtr2g033080.1 | E3 ubiquitin-protein ligase UPL6-like protein |
           HC | chr2:12520634-12509582 | 20130731
          Length = 374

 Score =  406 bits (1044), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/264 (75%), Positives = 223/264 (84%), Gaps = 5/264 (1%)

Query: 1   MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRLERNRRLWLRQQNTAALKIQKCFRGRK 60
           MFF GD    K VDLGG S KE DRKNLLEQT+LERN+RLWLR+QN+AAL+IQKCFR +K
Sbjct: 41  MFFDGDHLNHKCVDLGGCSCKEIDRKNLLEQTQLERNKRLWLREQNSAALQIQKCFRAKK 100

Query: 61  VVRAEQSDLRERFLRIHGKNCQNLDRNAFGPDSDFLRQFLYFFNAENVDDFLVLVQICRL 120
           VV+ EQS LR++FL I+GKNC N+DR AFGPDSDFLRQFLYFFNAEN DDFLVLVQICRL
Sbjct: 101 VVKTEQSKLRQKFLNIYGKNCLNVDRKAFGPDSDFLRQFLYFFNAENHDDFLVLVQICRL 160

Query: 121 LQQFVQESGDIVRLLAGADYSSVCALVNYRVKQLVHTCIRAIHHNRNQLKD-QLLLTSKK 179
           L QFVQESGD V+L AG  YSSVCA VNYRVK+L + CIR +HHNRNQLKD QLLLT K+
Sbjct: 161 LLQFVQESGDAVKLFAGESYSSVCAFVNYRVKKLAYNCIRVVHHNRNQLKDQQLLLTPKE 220

Query: 180 SNASAIPLLEVLVLLIDPKLPWSCKIVGYLSQNNAFSLLREIVLTGKDNVESCGYSEEGS 239
           SNASA PLLE++VLLID KLPWSCKIVGY SQNN F LLR+I+LTGKDN E C     GS
Sbjct: 221 SNASAFPLLEIIVLLIDLKLPWSCKIVGYFSQNNGFVLLRQIILTGKDNAEKCI----GS 276

Query: 240 SLERLLTVLICHIGQKPCICSHID 263
           SLER+LT ++CHIGQKPCICS ID
Sbjct: 277 SLERVLTGVMCHIGQKPCICSDID 300