Miyakogusa Predicted Gene

Lj6g3v1559320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1559320.1 gene.g66357.t1.1
         (161 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g034550.1 | outer envelope pore protein | HC | chr2:132044...   210   4e-55
Medtr4g121900.1 | outer envelope pore protein | HC | chr4:503246...   200   4e-52
Medtr2g096900.1 | outer envelope pore protein | HC | chr2:414141...    50   8e-07

>Medtr2g034550.1 | outer envelope pore protein | HC |
           chr2:13204427-13202151 | 20130731
          Length = 182

 Score =  210 bits (535), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 122/189 (64%), Positives = 135/189 (71%), Gaps = 35/189 (18%)

Query: 1   MNLKTSSEVETRALLDKVSSFDKNEGLFNLGHPLLNRIAECFVKAAGIGAVQAVSREGT- 59
           MNLKTSSEVETRALLD++ SFD+ +GLF+LGHPLLNRIAE FVKAAGIGAVQAVSRE   
Sbjct: 1   MNLKTSSEVETRALLDEICSFDR-KGLFDLGHPLLNRIAESFVKAAGIGAVQAVSREAYF 59

Query: 60  RGVDSNN----GSIPPELSGAKKNHLP-GLRG----------------------VAAGIY 92
             +D +     G IP ++S   K  LP GLRG                      VAAGIY
Sbjct: 60  TAIDGHKVDKGGVIPQDVSPTNKRRLPAGLRGETSNKSLDAMVINTGKESLQWGVAAGIY 119

Query: 93  SGLTYGLKEARGAHDWVVLLFWKNSAVAGAITGASLALTLEDVSHDQIVQCAITGAAIST 152
           SGLTYGLKEARGAHDW      KNSAVAGAITGA+LALTLED +H+ +VQCAITGAAIST
Sbjct: 120 SGLTYGLKEARGAHDW------KNSAVAGAITGATLALTLEDSTHEHVVQCAITGAAIST 173

Query: 153 AANLLTGIF 161
            ANLL GIF
Sbjct: 174 VANLLKGIF 182


>Medtr4g121900.1 | outer envelope pore protein | HC |
           chr4:50324677-50326368 | 20130731
          Length = 179

 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 114/188 (60%), Positives = 133/188 (70%), Gaps = 38/188 (20%)

Query: 3   LKTSSEVETRALLDKVSSFDKNEGLFNLGHPLLNRIAECFVKAAGIGAVQAVSRE----- 57
           + ++S +ETR LLD++S F+K  GLF+ GHPL+NRIAE FVKAAGIGAVQAVSRE     
Sbjct: 1   MNSNSNLETRTLLDELSDFNKG-GLFDFGHPLVNRIAESFVKAAGIGAVQAVSREAYFTV 59

Query: 58  --GTRGVDSNNGSIPPELSGAKKNHLPGLRG----------------------VAAGIYS 93
             GT G+D N G +PPE+SGAKKN   GLRG                      +AAG+YS
Sbjct: 60  IEGT-GID-NAGGMPPEISGAKKNRFHGLRGETSSKSIEAMVKNTGKESFQWGLAAGLYS 117

Query: 94  GLTYGLKEARGAHDWVVLLFWKNSAVAGAITGASLALTLEDVSHDQIVQCAITGAAISTA 153
           GLTYG+KEARG HDW      KNSAVAGAITGA+LA T ++ SH+QI QCAITGAAISTA
Sbjct: 118 GLTYGMKEARGTHDW------KNSAVAGAITGAALACTSDNTSHEQIAQCAITGAAISTA 171

Query: 154 ANLLTGIF 161
           ANLLTGIF
Sbjct: 172 ANLLTGIF 179


>Medtr2g096900.1 | outer envelope pore protein | HC |
           chr2:41414166-41412292 | 20130731
          Length = 147

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 23  KNEGLFNLGHPLLNRIAECFVKAAGIGAVQAVSREGTRGVDSNNGSIPPELSGAKKNHLP 82
           K + + ++G+PLLN   + F+K   + A +A++ +    V   + S        KK    
Sbjct: 14  KVDVVIDMGNPLLNLTVDGFLKIGAVAATRALAEDTYHIVRKGSVSSSDFEKTLKKTFKE 73

Query: 83  G-LRGVAAGIYSGLTYGLKEARGAHDWVVLLFWKNSAVAGAITGA 126
           G   G  AG+Y G  YG++  RG  D      WKN+   GA+TGA
Sbjct: 74  GAYWGAIAGVYVGTEYGVQRIRGTRD------WKNATFGGAVTGA 112