Miyakogusa Predicted Gene

Lj6g3v1525990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1525990.1 Non Characterized Hit- tr|I1MGI3|I1MGI3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.41943
PE,84.5,0,ZF_SWIM,Zinc finger, SWIM-type; MULE,MULE transposase
domain; SWIM,Zinc finger, SWIM-type; SUBFAMILY,CUFF.59587.1
         (468 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g035820.1 | FAR1 DNA-binding domain protein | LC | chr4:12...    74   2e-13
Medtr8g447350.1 | hypothetical protein | HC | chr8:18615160-1861...    49   8e-06

>Medtr4g035820.1 | FAR1 DNA-binding domain protein | LC |
           chr4:12632859-12628018 | 20130731
          Length = 668

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 6/115 (5%)

Query: 140 TFWALPFLRRYFFAGLTSTCQSESINAFIQRFLSAQSQPDRFLEQVADIVDFNDRTGAKQ 199
            +WAL +LR +FF G+T+T +SESINAFI+RF+++ +    F +QV   +D   +     
Sbjct: 325 NYWALAYLRDHFFGGMTTTGRSESINAFIKRFINSHTSLTDFAKQVDVAIDDIKQKEDHD 384

Query: 200 KMQRKLQKVCLKTGSPIESHAATVLTPYALSKLQDELVLAPQYASFLVDEGCFQV 254
            M  K +   +K  SP++  A  VLT ++  K Q+EL      AS  + + C ++
Sbjct: 385 IMLEKCKGSNMKLMSPLQEQAHCVLTRFSFQKFQEEL------ASIFLHKDCHEI 433


>Medtr8g447350.1 | hypothetical protein | HC |
           chr8:18615160-18613818 | 20130731
          Length = 184

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 22/111 (19%)

Query: 201 MQRKLQKVCLKTGSPIESHAATVLTPYALSKLQDELVLAPQYASFLVDEGCFQVRHHAHT 260
           M  K +   +K  SP++  A +VLT ++  K Q+E     +Y          +V    H 
Sbjct: 1   MLEKCKGSNMKLMSPLQEQAHSVLTRFSFQKFQEEF---EKYYK--------EVNSRKHV 49

Query: 261 DGGCKVFWVPCEEHISCSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPS 311
                VFW    E  +CS  LFEF GILCRH+L +        IP  YLPS
Sbjct: 50  -----VFWDG--EVDTCSSKLFEFWGILCRHILSIFLQE----IPSNYLPS 89