Miyakogusa Predicted Gene

Lj6g3v1525980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1525980.1 Non Characterized Hit- tr|F6HQT4|F6HQT4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,29.41,0.00000000000009,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; ZF_SWIM,Zinc finger, SWIM-type; SWIM,Zinc finger,
S,CUFF.59586.1
         (268 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g447350.1 | hypothetical protein | HC | chr8:18615160-1861...    51   1e-06
Medtr3g095940.1 | hypothetical protein | LC | chr3:43843817-4383...    50   3e-06

>Medtr8g447350.1 | hypothetical protein | HC |
           chr8:18615160-18613818 | 20130731
          Length = 184

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 22/111 (19%)

Query: 1   MQRKLQKVCLKTGSPIESHAATVLTPYALSKLQDELVLAPQYASFLVDEGCFQVRHHAHT 60
           M  K +   +K  SP++  A +VLT ++  K Q+E     +Y          +V    H 
Sbjct: 1   MLEKCKGSNMKLMSPLQEQAHSVLTRFSFQKFQEEF---EKYYK--------EVNSRKHV 49

Query: 61  DGGCKVFWVPCEEHISCSCHLFEFTGILCRHVLRVMSTNNCFHIPDQYLPS 111
                VFW    E  +CS  LFEF GILCRH+L +        IP  YLPS
Sbjct: 50  -----VFWDG--EVDTCSSKLFEFWGILCRHILSIFLQE----IPSNYLPS 89


>Medtr3g095940.1 | hypothetical protein | LC |
           chr3:43843817-43838164 | 20130731
          Length = 149

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 33/49 (67%)

Query: 10  LKTGSPIESHAATVLTPYALSKLQDELVLAPQYASFLVDEGCFQVRHHA 58
           ++T  P E HAA+VLTPYA   LQ E+ L+ +YA+  +D G + V++H 
Sbjct: 94  IRTCFPTEEHAASVLTPYAFKLLQHEIELSTKYAATEIDNGSYIVQYHT 142