Miyakogusa Predicted Gene

Lj6g3v1468230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1468230.1 Non Characterized Hit- tr|G1QJI6|G1QJI6_NOMLE
Uncharacterized protein OS=Nomascus leucogenys
GN=NCAP,43.8,3e-17,DUF1032,Non-SMC condensin II complex, subunit
H2-like; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NU,CUFF.59529.1
         (692 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g436080.1 | condensin-2 complex subunit H2-like protein | ...   857   0.0  

>Medtr2g436080.1 | condensin-2 complex subunit H2-like protein | HC
           | chr2:13980124-13986564 | 20130731
          Length = 818

 Score =  857 bits (2215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/592 (73%), Positives = 487/592 (82%), Gaps = 11/592 (1%)

Query: 1   MTRDNPEPAGGGFHTVHAERDLQSNWEVDLAKKLEDYLLKICSGEITGEEEGHIPVNFAE 60
           MT+D PE +GG FH VHAERDLQSNWEVDLAKKLE+YLLKICSGEITGEE     VNFAE
Sbjct: 1   MTKDAPESSGGAFHAVHAERDLQSNWEVDLAKKLEEYLLKICSGEITGEEH----VNFAE 56

Query: 61  AALLLQGSIQVYSRKVEYLYSLVLKALEFLSQKRQQEHVDGTSAQPEESGPSAVADEEND 120
           AALLLQGSIQVYSRKVEYLY+LVL+ALEFLSQKRQ + VDG S QP+E+GPSAVA EEND
Sbjct: 57  AALLLQGSIQVYSRKVEYLYNLVLRALEFLSQKRQADPVDGESVQPDEAGPSAVAVEEND 116

Query: 121 EFWGLDDIPVEEKNSLDASTGKEVNLDQFIKPPANLVVLEGDCLDAVGDGGELESYLLST 180
           +FWGLDDIPV+EKNSLD+S GK+VNLDQFIKPPANLVVLEGDCLD  GDGGELESYLLST
Sbjct: 117 QFWGLDDIPVDEKNSLDSSAGKDVNLDQFIKPPANLVVLEGDCLDTGGDGGELESYLLST 176

Query: 181 TDLYQDFILLDSSDAVAVDEFLKGRKAVMTQNGTSRGFSNRKSFLSPRRTGGSAHRASAA 240
           TDLYQDFILLD SDAVAVDEF+KG KA  T+NGT++  S RKSFLSPRR+GGSAH+ SAA
Sbjct: 177 TDLYQDFILLDMSDAVAVDEFMKGGKAGTTRNGTNKATSTRKSFLSPRRSGGSAHK-SAA 235

Query: 241 KSPRANSNCSPKNLNFDDNNAGPSSPVSAGLDNCDFGFNMNDGFDTXXXXXXXX-XXXXX 299
           KS RANS CSPKN NF+D +A P+SP SAG DN DFG NM+DGFDT              
Sbjct: 236 KSQRANSMCSPKNFNFEDKDARPNSPASAGFDNGDFGPNMDDGFDTQMDADNSDLEDEDD 295

Query: 300 PWKPLNPHEPGNLRVKPFRKVKALRKTAINVTRPISTSTLFPPAKLHGPVSPELMELWEM 359
           PWKPLNPHEPGNL+VKPFRKVK+ RK  INV   +S STLFP AKLHGP+SPELME+WEM
Sbjct: 296 PWKPLNPHEPGNLKVKPFRKVKSSRKIRINVKHRVSMSTLFPLAKLHGPISPELMEMWEM 355

Query: 360 RHPAHEREKESQPPPPLYEKLRQSLINEENETGGIFFNSEADNDDNEYDSGNPDFDMPGS 419
           R  AH+R K+SQ  P LYEKLRQSLIN+ NETGG F N+E DNDDNE+D+G P+ DMPG+
Sbjct: 356 RRCAHQRRKDSQSTPTLYEKLRQSLINDGNETGGAFLNTEDDNDDNEWDNGYPEIDMPGN 415

Query: 420 AFMDEDLPPGNNEHGVDDAHVNVDE----EFPNSQTSMEDLCRSHLNALLASIAENEKQT 475
             MDEDLPP NNEH V+D H N DE    EFP+SQTS+EDLCRSHLNALLASIAE EKQT
Sbjct: 416 DVMDEDLPPFNNEHEVEDVHANADEAVDLEFPDSQTSLEDLCRSHLNALLASIAETEKQT 475

Query: 476 EMAARVSTWKQRIEHNLEEQDSHPPFDIQDYGAKILDKXXXXXXXXXXXXXXXDLVKGQE 535
           EMAARVSTWKQRIEHNLEEQ+SHPPFDI+DYG KI+DK               DLVKGQ 
Sbjct: 476 EMAARVSTWKQRIEHNLEEQESHPPFDIRDYGEKIMDK-LSLEESSSNVLPFSDLVKGQV 534

Query: 536 KYDVSRSFSALLQLVNNRDVDLERNGFEGGSVCYTTDNPFHVKLLENDKNRE 587
           KYDVSRSFS+LLQLVNN +VDL+R+   G S CYT+ NPFHV+LL++DK +E
Sbjct: 535 KYDVSRSFSSLLQLVNNGEVDLQRHDAPGESFCYTSVNPFHVRLLKHDKRQE 586