Miyakogusa Predicted Gene

Lj6g3v1444590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1444590.1 tr|G7L2J4|G7L2J4_MEDTR 40S ribosomal protein S21
OS=Medicago truncatula GN=MTR_7g076530 PE=3 SV=1,92.59,7e-38,40S
RIBOSOMAL PROTEIN S21,Ribosomal protein S21e;
RS21B_ARATH_Q9M337;,Ribosomal protein S21e; Riboso,CUFF.59500.1
         (82 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g076530.1 | 40S ribosomal S21-like protein | HC | chr7:288...   164   1e-41
Medtr2g436800.1 | 40S ribosomal S21-like protein | HC | chr2:143...   160   3e-40

>Medtr7g076530.1 | 40S ribosomal S21-like protein | HC |
          chr7:28815298-28816510 | 20130731
          Length = 81

 Score =  164 bits (416), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/81 (93%), Positives = 79/81 (97%)

Query: 1  MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
          MQNEEGQITELYIPRKCSATNRLITAKDHASVQIN+GHLDESGVYNGQFST+ALCG+ RA
Sbjct: 1  MQNEEGQITELYIPRKCSATNRLITAKDHASVQINVGHLDESGVYNGQFSTFALCGFTRA 60

Query: 61 QGDADSAIDRLWQKKKAEIKQ 81
          QGDADS IDRLWQKKKAEIKQ
Sbjct: 61 QGDADSGIDRLWQKKKAEIKQ 81


>Medtr2g436800.1 | 40S ribosomal S21-like protein | HC |
          chr2:14364364-14366678 | 20130731
          Length = 81

 Score =  160 bits (404), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 77/81 (95%)

Query: 1  MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
          MQNEEGQITELYIPRKCSATNRLITAKDHASVQ+NIGHLDESGVYNG FST+ALCG+ RA
Sbjct: 1  MQNEEGQITELYIPRKCSATNRLITAKDHASVQLNIGHLDESGVYNGHFSTFALCGFTRA 60

Query: 61 QGDADSAIDRLWQKKKAEIKQ 81
          QGDADS IDRLWQKKK E+KQ
Sbjct: 61 QGDADSGIDRLWQKKKTELKQ 81