Miyakogusa Predicted Gene

Lj6g3v1442310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1442310.1 tr|A9T655|A9T655_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_140834,42.98,2e-17, ,CUFF.59489.1
         (195 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g436940.1 | hypothetical protein | HC | chr2:14451781-1444...   305   2e-83

>Medtr2g436940.1 | hypothetical protein | HC |
           chr2:14451781-14448712 | 20130731
          Length = 198

 Score =  305 bits (781), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 152/198 (76%), Positives = 168/198 (84%), Gaps = 3/198 (1%)

Query: 1   MGQAFRRASGRIRAASEADTSSLSRPKPAVDHRPPT-KVAADKSAEISKAAQ--QDVLEA 57
           MGQAFRRASGRIRAASE DTSSLS+PK AVDHRPP  KVA DK+A+ SK  +  +D L  
Sbjct: 1   MGQAFRRASGRIRAASETDTSSLSKPKIAVDHRPPPPKVATDKAADSSKTVKGVEDSLND 60

Query: 58  DDRPRVNVDNILEERDPSYDAMLGQMVGRIKSKPGGKSEMGEAFLVEKYRRPMPRLRNTK 117
           DDRP  N+DN+LEE+DP +DAMLGQM+GRI SKPGGK EMGEA +VEKY RPMP+LRNTK
Sbjct: 61  DDRPSANLDNVLEEKDPKFDAMLGQMLGRITSKPGGKREMGEASVVEKYNRPMPKLRNTK 120

Query: 118 PDSGGYEERPVPTGTLNVAQLRQIILLHNGKAEDHNGPMDAHQIAEKFQVDVVQIQRILQ 177
           P+SG YEERPVP GTLNVAQLR IILLH GKA+DHNGPMD HQIAEKF+VDV QIQ+ILQ
Sbjct: 121 PNSGHYEERPVPAGTLNVAQLRHIILLHEGKADDHNGPMDVHQIAEKFRVDVGQIQKILQ 180

Query: 178 FLSEPPEGSKEDKNKTPR 195
           FLS PPEG  EDKNKT R
Sbjct: 181 FLSHPPEGRSEDKNKTLR 198