Miyakogusa Predicted Gene

Lj6g3v1422210.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1422210.2 tr|B9N510|B9N510_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_581778 PE=4
SV=1,65.28,3e-19,coiled-coil,NULL; seg,NULL,CUFF.59485.2
         (136 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g437470.1 | hypothetical protein | HC | chr2:14717140-1472...   129   1e-30

>Medtr2g437470.1 | hypothetical protein | HC |
           chr2:14717140-14723111 | 20130731
          Length = 226

 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 71/86 (82%), Gaps = 2/86 (2%)

Query: 12  RLAHPGGPLATNKAAALAKFLERKLKEPNGMDHINPDLLELAVNNAKQTVYASSASTSKR 71
           RLAHPGGP+ATNKAAALAKFLERKLKEPNG+  INPDLLE+AV NAKQTV  S  S SKR
Sbjct: 36  RLAHPGGPVATNKAAALAKFLERKLKEPNGLASINPDLLEVAVKNAKQTVSTSGTSNSKR 95

Query: 72  TVRHVEFFGDSDSKDSAEEQNELSEV 97
            VRHVE FGDSD+  S EEQN+L  V
Sbjct: 96  NVRHVESFGDSDA--SEEEQNDLPAV 119