Miyakogusa Predicted Gene

Lj6g3v1415950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1415950.1 tr|Q8H3W6|Q8H3W6_ORYSJ WD-40 repeat protein-like
OS=Oryza sativa subsp. japonica GN=P0585H11.112
PE=,37.34,7e-19,seg,NULL,CUFF.59463.1
         (225 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g437810.1 | transducin/WD-like repeat-protein | HC | chr2:...   259   1e-69

>Medtr2g437810.1 | transducin/WD-like repeat-protein | HC |
           chr2:14937390-14929102 | 20130731
          Length = 514

 Score =  259 bits (662), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 137/229 (59%), Positives = 155/229 (67%), Gaps = 9/229 (3%)

Query: 1   MPPPPELPGFYYDPEKNRYFXXXXXXXXXXXXXXXXXXXXDLNXXXXXXXXXXXXXXXXY 60
           MPP  ELPGFY+DPEKNRYF                                        
Sbjct: 1   MPPARELPGFYFDPEKNRYFPIKGPIPGSSSSKTKIITPR----PSQPSSSQLQEKNRSS 56

Query: 61  CWKVRNRTTSNLLQGRELGGHHVSASH---C-FSEEFRKMQASQPAVWKYQGTDKIGISA 116
           C K+RNRT S LLQ REL G HV+ASH   C F+EE RK+Q SQPAVWKYQGT++IGISA
Sbjct: 57  CRKLRNRT-SKLLQIRELDGRHVNASHYCKCNFTEELRKIQTSQPAVWKYQGTNRIGISA 115

Query: 117 LEHMKVDVKTAEGRVETDVLLTGSINGTLSFCEVGRVGQNFDSGVTWMPDHVKNYVGGKT 176
           LEH+ VDV+TAEGR  TDVLL GSING+LSF EVGR+GQNFD GV WMPD VK+ + GKT
Sbjct: 116 LEHLNVDVQTAEGRFRTDVLLNGSINGSLSFSEVGRIGQNFDDGVKWMPDCVKSRIKGKT 175

Query: 177 DERYEVPGPVSRPNGASLIMSSRVSCIRLGSKCSSTAVNDDPIVGHALF 225
           DE  EVPGP+ RPNGA+LIMSSR+SCIRLG   S  A ND+PIVG+ LF
Sbjct: 176 DEHNEVPGPLFRPNGATLIMSSRISCIRLGPNVSPHAANDNPIVGNILF 224